Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_021536.1
Length=171797
Score E
Sequences producing significant alignments: (Bits) Value
seq4110 89.7 6e-13
seq3583 84.2 2e-11
seq6008 82.4 8e-11
>seq4110
Length=2169
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 9773 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831
|||| |||||||||| ||| |||||||||||| ||||| |||||| |||| ||||||||
Sbjct 2098 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 2039
Query 9832 TCCGCTATTCTCCA 9845
|||| |||||||||
Sbjct 2038 TCCGATATTCTCCA 2025
>seq3583
Length=2760
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/96 (81%), Gaps = 5/96 (5%)
Strand=Plus/Plus
Query 9773 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831
|||| ||||||||||||| |||||| ||||||||||| ||||| |||| ||||||||
Sbjct 1964 GGGGGGTTAGCTCAGTTGGCTAGAGCACCTGCTTTGCACGCAGGGGGTCATCGGTTCGAC 2023
Query 9832 TCCGCTATTCTCC---ATCGGAGGGAATACAAAAGG 9864
|||| ||| |||| | |||||| || |||||||
Sbjct 2024 TCCGATATCCTCCACAAACGGAGGTTAT-CAAAAGG 2058
>seq6008
Length=1359
Score = 82.4 bits (90), Expect = 8e-11
Identities = 219/325 (67%), Gaps = 10/325 (3%)
Strand=Plus/Plus
Query 90841 GAAAAACCCTTTGGCAACGAT-TATAAATCTGCTGATCATCT-ATCAACTTTGGTTGCTA 90898
|||||||| ||||||| ||| || ||| | || | | || | ||| || ||||||
Sbjct 689 GAAAAACCGTTTGGCAGCGACCTACAAAGC-GCCAAAGACCTGAACAAGTT--GTTGCTG 745
Query 90899 GACA--TTTACGCGAAAAACAGGTTTATCGCATTGACCATTATCTCGGCAAAGATACTGT 90956
| || |||| | ||||||||| | ||||| || || ||||| || || || || || ||
Sbjct 746 GCCAAGTTTAAG-GAAAAACAGATCTATCGTATCGATCATTACCTGGGTAAGGAAACCGT 804
Query 90957 TAATAACATACTTGCTACTAGGTTTAGCAATATTCTGTTGGAACCTTTATGGAACCGCAA 91016
| ||| | | ||| | ||| ||| || | || || | |||||||||| ||
Sbjct 805 GCAAAACCTGATGGCTTTCCGTTTTGCCAACATCTTCTTTGAGTCATTATGGAACCATAA 864
Query 91017 TTACATAGATGAGATTCAAATCTATGCAACTGAAACTATCGGT-TGTGAAGGTCGTTCTC 91075
|||||| || | | || || | | |||| ||| ||| || | || ||| |
Sbjct 865 TTACATTGAACATGTACAGATAACGGTGGCCGAAAATATTGGTGTGGGTAGC-CGTGGTA 923
Query 91076 AATACTATGAAACTGCTGGTGCAGTTAGAGATATGTTACAGAATCACATTTTGCAGGTTC 91135
| || || ||||| || ||||| | | |||||| ||||||||||| | || ||| | |
Sbjct 924 ATTATTACGAAACGGCAGGTGCCCTGCGTGATATGATACAGAATCACCTGTTCCAGTTAC 983
Query 91136 TTGCTCTCATAGCTATGGAAGCACC 91160
| | | | |||||||||| ||||
Sbjct 984 TGTGTGTAACAGCTATGGAACCACC 1008
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 549558623190760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |