Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq4110 89.7 6e-13 seq3583 84.2 2e-11 seq6008 82.4 8e-11 >seq4110 Length=2169 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 9773 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 |||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 2098 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 2039 Query 9832 TCCGCTATTCTCCA 9845 |||| ||||||||| Sbjct 2038 TCCGATATTCTCCA 2025 >seq3583 Length=2760 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/96 (81%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 9773 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 |||| ||||||||||||| |||||| ||||||||||| ||||| |||| |||||||| Sbjct 1964 GGGGGGTTAGCTCAGTTGGCTAGAGCACCTGCTTTGCACGCAGGGGGTCATCGGTTCGAC 2023 Query 9832 TCCGCTATTCTCC---ATCGGAGGGAATACAAAAGG 9864 |||| ||| |||| | |||||| || ||||||| Sbjct 2024 TCCGATATCCTCCACAAACGGAGGTTAT-CAAAAGG 2058 >seq6008 Length=1359 Score = 82.4 bits (90), Expect = 8e-11 Identities = 219/325 (67%), Gaps = 10/325 (3%) Strand=Plus/Plus Query 90841 GAAAAACCCTTTGGCAACGAT-TATAAATCTGCTGATCATCT-ATCAACTTTGGTTGCTA 90898 |||||||| ||||||| ||| || ||| | || | | || | ||| || |||||| Sbjct 689 GAAAAACCGTTTGGCAGCGACCTACAAAGC-GCCAAAGACCTGAACAAGTT--GTTGCTG 745 Query 90899 GACA--TTTACGCGAAAAACAGGTTTATCGCATTGACCATTATCTCGGCAAAGATACTGT 90956 | || |||| | ||||||||| | ||||| || || ||||| || || || || || || Sbjct 746 GCCAAGTTTAAG-GAAAAACAGATCTATCGTATCGATCATTACCTGGGTAAGGAAACCGT 804 Query 90957 TAATAACATACTTGCTACTAGGTTTAGCAATATTCTGTTGGAACCTTTATGGAACCGCAA 91016 | ||| | | ||| | ||| ||| || | || || | |||||||||| || Sbjct 805 GCAAAACCTGATGGCTTTCCGTTTTGCCAACATCTTCTTTGAGTCATTATGGAACCATAA 864 Query 91017 TTACATAGATGAGATTCAAATCTATGCAACTGAAACTATCGGT-TGTGAAGGTCGTTCTC 91075 |||||| || | | || || | | |||| ||| ||| || | || ||| | Sbjct 865 TTACATTGAACATGTACAGATAACGGTGGCCGAAAATATTGGTGTGGGTAGC-CGTGGTA 923 Query 91076 AATACTATGAAACTGCTGGTGCAGTTAGAGATATGTTACAGAATCACATTTTGCAGGTTC 91135 | || || ||||| || ||||| | | |||||| ||||||||||| | || ||| | | Sbjct 924 ATTATTACGAAACGGCAGGTGCCCTGCGTGATATGATACAGAATCACCTGTTCCAGTTAC 983 Query 91136 TTGCTCTCATAGCTATGGAAGCACC 91160 | | | | |||||||||| |||| Sbjct 984 TGTGTGTAACAGCTATGGAACCACC 1008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549558623190760