Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_021772.1
Length=72394
Score E
Sequences producing significant alignments: (Bits) Value
seq2169 84.2 1e-11
>seq2169
Length=6790
Score = 84.2 bits (92), Expect = 1e-11
Identities = 176/259 (68%), Gaps = 4/259 (2%)
Strand=Plus/Plus
Query 12404 CCAGGTGAAACCAAGTTAATTGAAACTGGTTTGGCTATTCATCTGGACGATG--TACATG 12461
|| || ||||||| | ||| || ||| |||| |||||| | ||| | ||| |
Sbjct 2727 CCTGGGGAAACCATTATGATTCCTACCGGTATGGCGATTCATATCGACAACACTTAC-TA 2785
Query 12462 TAGCTGCAATGATTCTTCCTCGTTCAGGTCTAGGCCATAAACATGGTGTAGTGCTTGGGA 12521
| ||||| |||||| | || ||||| || | || ||||||||||| ||||||| || |
Sbjct 2786 T-GCTGCCATGATTTTGCCGCGTTCTGGCTTGGGTCATAAACATGGGATAGTGCTGGGCA 2844
Query 12522 ACCTTACTGGTCTGATTGATTCAGATTATCAGGGTGAACTTATGGTAAGCCTCTGGAATC 12581
|||| || |||||||| || ||||| |||||| |||| | || ||||||||
Sbjct 2845 ACCTGGTAGGGCTGATTGACTCTGATTACCAGGGTCAACTGCTTGTTTCATGCTGGAATC 2904
Query 12582 GCTCTACAGAGCCTTTTACTGTTAACCCTGGTGACCGTATTGCTCAGATGGTAATCGTGC 12641
| | ||||| || | | ||||| || || | || || ||||| || ||||
Sbjct 2905 GTAGCAAGGAGCCGTTCATCCTGAACCCAATGGAGCGGGTCGCGCAAATGGTGATTGTGC 2964
Query 12642 CTGTAATGCAGCCTGAGTT 12660
| || ||||| | || ||
Sbjct 2965 CGGTTGTGCAGGCGGACTT 2983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 231509804812865
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |