Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_021772.1 Length=72394 Score E Sequences producing significant alignments: (Bits) Value seq2169 84.2 1e-11 >seq2169 Length=6790 Score = 84.2 bits (92), Expect = 1e-11 Identities = 176/259 (68%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 12404 CCAGGTGAAACCAAGTTAATTGAAACTGGTTTGGCTATTCATCTGGACGATG--TACATG 12461 || || ||||||| | ||| || ||| |||| |||||| | ||| | ||| | Sbjct 2727 CCTGGGGAAACCATTATGATTCCTACCGGTATGGCGATTCATATCGACAACACTTAC-TA 2785 Query 12462 TAGCTGCAATGATTCTTCCTCGTTCAGGTCTAGGCCATAAACATGGTGTAGTGCTTGGGA 12521 | ||||| |||||| | || ||||| || | || ||||||||||| ||||||| || | Sbjct 2786 T-GCTGCCATGATTTTGCCGCGTTCTGGCTTGGGTCATAAACATGGGATAGTGCTGGGCA 2844 Query 12522 ACCTTACTGGTCTGATTGATTCAGATTATCAGGGTGAACTTATGGTAAGCCTCTGGAATC 12581 |||| || |||||||| || ||||| |||||| |||| | || |||||||| Sbjct 2845 ACCTGGTAGGGCTGATTGACTCTGATTACCAGGGTCAACTGCTTGTTTCATGCTGGAATC 2904 Query 12582 GCTCTACAGAGCCTTTTACTGTTAACCCTGGTGACCGTATTGCTCAGATGGTAATCGTGC 12641 | | ||||| || | | ||||| || || | || || ||||| || |||| Sbjct 2905 GTAGCAAGGAGCCGTTCATCCTGAACCCAATGGAGCGGGTCGCGCAAATGGTGATTGTGC 2964 Query 12642 CTGTAATGCAGCCTGAGTT 12660 | || ||||| | || || Sbjct 2965 CGGTTGTGCAGGCGGACTT 2983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231509804812865