Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq314 181 1e-39
seq69 174 2e-37
seq334 120 4e-21
seq19 116 5e-20
seq77 113 6e-19
seq409 100 3e-15
seq179 95.1 1e-13
>seq314
Length=49253
Score = 181 bits (200), Expect = 1e-39
Identities = 329/478 (69%), Gaps = 5/478 (1%)
Strand=Plus/Minus
Query 1573766 CGACTTTGGCCTCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGG 1573825
|||||||| |||||| | |||||||| || || || | | |||| | || ||
Sbjct 43408 CGACTTTGAAGCGCCGTGGGTGGAAAAGTACCGTCCACGCGTCTTGGCCGACGTCGTGGG 43349
Query 1573826 CAACGAGCACGCCGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCT 1573885
|||| || | |||| |||| || |||| || |||| ||||| ||||| |
Sbjct 43348 CAACCGCAACACGATCGCGAGTCTCCAGGCCATGGCGCGCGCCGGCAACATGACCAACTT 43289
Query 1573886 CTTGCTGGCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGT 1573945
| || || || ||||| || ||||||||||||||||| ||| |||||| |||| |
Sbjct 43288 GATCCTCGCCGGGCCGCCGGGAACGGGCAAGACCACGAGTATCTTGTGTCTCGCGCACGA 43229
Query 1573946 CCTCTTGGGCGCGGC---CGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCG 1574002
||||| ||| || | | | | |||||||||| || || |||||||||||||||||
Sbjct 43228 GCTCTTAGGCCCGACGTATGTCAAACAGGCCGTGCTGGAGCTGAACGCGTCGGACGAGCG 43169
Query 1574003 CGGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGC 1574061
|| ||||| || || | || |||||| ||| ||| | ||| || |
Sbjct 43168 TGGGATCGACACGGTCCGGACGAAGATCAAGATGTTCGCGCAGCAGA-AAGTGACGCTCC 43110
Query 1574062 CGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCC 1574121
|||| || ||||||||| | | || ||||||||||| ||| | | ||| | || || |
Sbjct 43109 CGCCAGGGCGCCACAAGCTCGTGATTCTCGACGAGGCGGACGCCATGACGGCTGCAGCTC 43050
Query 1574122 AGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGT 1574181
||||||| || || || ||||| | | || |||||||| || || ||||
Sbjct 43049 AGCAGGCACTTCGACGGACGATGGAGCTCTTCTCTGCTACCACGCGCTTCGCTCTCGCGT 42990
Query 1574182 GCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239
|||||| ||| ||| ||||| ||| || | || |||||||| ||||| ||||||||
Sbjct 42989 GCAACAACTCGACGAAAGTCATTGAGCCCATTCAGAGTCGCTGTGCCATGCTGCGCTT 42932
>seq69
Length=63067
Score = 174 bits (192), Expect = 2e-37
Identities = 232/316 (73%), Gaps = 6/316 (2%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||||| |||||||||||| ||| |||||||||||| |||||||||| |||||||||
Sbjct 13401 GCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATC 13342
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCG-CAT-CCGAGCGACG 868808
| |||||||| || ||||| | | | | ||| || || ||||||||
Sbjct 13341 ATGTCCATCCAGTCAAATGGGTTCTTTGCATGGAAAATCTT--CGACACGCCGAGCGAGT 13284
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
| ||||||||| || |||||||| ||||||||||||||||| | | ||||||||| |
Sbjct 13283 ACAACAGGCGGTCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAA 13224
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
| ||| | || |||||||| || | ||||||||| | ||||||| || || ||| |
Sbjct 13223 TCAGCTCAACGGGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGAA 13164
Query 868929 TGATCTGCCTGGGCAC-GTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987
||||| | ||| | | ||| | | ||||||| || ||| | | ||| | |||||
Sbjct 13163 TGATC-GTGTGGACGCGGTCCTCGGGCAGCTTGTTCACTAGCTTGGAGTACATGAGGCAC 13105
Query 868988 GCAAAGTCGCAGTGCA 869003
|||||||| |||||
Sbjct 13104 GCAAAGTCCGTGTGCA 13089
Score = 170 bits (188), Expect = 2e-36
Identities = 217/296 (73%), Gaps = 2/296 (1%)
Strand=Plus/Minus
Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690
||||||||||||| || || |||||||||||||| |||||| || | || | |||||
Sbjct 12806 CCGAGTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTT 12747
Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750
| || || || | || |||||| |||||| ||| ||||| || ||||| || |
Sbjct 12746 GCACTTCATTGCTAAAGTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAA 12687
Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810
| || || || || |||||||||||||| ||||| | ||| |||| | ||||||
Sbjct 12686 AGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCT 12627
Query 869811 CGGTGTCG-GCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
| ||| || | | ||| | |||||| || ||||||| ||| || || ||||| |||
Sbjct 12626 TGAGATCGTGCAC-CAAGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTG 12568
Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925
||||||| ||| || | || | |||| || ||||| |||||||||||||||||
Sbjct 12567 TACATCTGCCACACGTCGTGCTCTTGGATCGGAAAGAGCACAAAGCGGTTGGGGTT 12512
Score = 129 bits (142), Expect = 7e-24
Identities = 200/283 (71%), Gaps = 11/283 (4%)
Strand=Plus/Minus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| || || ||||| || | ||||| ||| |||||| |||||||| |||||||||
Sbjct 13086 CCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGCTTC 13027
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|| ||||||||||| | |||||| ||||||||| || ||||| ||||| | ||||||
Sbjct 13026 TTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCAAAT 12967
Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGAT----CCACTTCATCGC 869355
| | |||||||| || || ||| | | ||||| | | |||||| | |||
Sbjct 12966 GCCAGCAGCCGCTCCGC----GT-ACGAAG--ATACTTGTGGGTCGCACCACTTGAGCGC 12914
Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415
||| | ||| || || | || |||| | || || || ||||| | ||||| |||||
Sbjct 12913 CCAATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCCTT 12854
Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAG 869458
|| | || || || | || ||||| || || |||||||||
Sbjct 12853 CTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAG 12811
>seq334
Length=35171
Score = 120 bits (132), Expect = 4e-21
Identities = 163/223 (73%), Gaps = 6/223 (3%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || || | | ||||| |||||||| ||||||||||| || | |||
Sbjct 24244 GCTTGGCCAGCTCCCCAGGAAGCATCAGACGCACGGCCGTCTGGATCTCACGACT--CGA 24187
Query 1254403 TCGTGTTGCG--CTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460
| || | |||||| || ||| || ||| ||||| | | ||||||| ||||
Sbjct 24186 CAGCGTCGACTTCTTGTTGTAGCGCGAGAGCTTGCCCGCCTCCGAGGCGATGCGCTCGAA 24127
Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTG-TTGGAGATGCCCACGTCGG 1254519
||||| |||| ||||||||||||| |||||| | | | ||| ||||||| || |
Sbjct 24126 GATGTCATTGATGAACGAGTTCATGATCGACAT-GCCGCGCTTGCTGATGCCCGTCTCCG 24068
Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562
||||||| || ||||||||||||||| ||| |||||||||
Sbjct 24067 GGTGCACTTGACGCAGCACCTTGTAGATGTACGTCGAGTACGA 24025
>seq19
Length=176502
Score = 116 bits (128), Expect = 5e-20
Identities = 286/431 (66%), Gaps = 2/431 (0%)
Strand=Plus/Plus
Query 18060 CATGAGCACATTCGGCAAGGTATTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGG 18119
|||||| ||||||||| | | ||| | ||||| || || |||||||| ||| | |||
Sbjct 76273 CATGAGTACATTCGGCCGGTTCTTTCGTGTCACGACGTTCGGCGAGTCCCACTGCAAGGG 76332
Query 18120 CGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCA 18179
||| ||||||||| |||||||||||||||| | | | | || | || || || |||||
Sbjct 76333 CGTGGGCTGCATCGTCGACGGCGTGCCGCCTTCCCTCGCCCTCACAGAAGCGGATATCCA 76392
Query 18180 GCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCC 18239
||| ||| | || || || || |||||| || | || | ||||| || ||||
Sbjct 76393 GCCGCAGCTCACCCGCCGTCGTCCTGGCCAGAGCACGCTCACGACGCCTCGGGACGAAAA 76452
Query 18240 CGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGG 18299
|||| || | ||| | ||||| || || || || |||||||| | || || |
Sbjct 76453 AGATCAAGTGACGATCATGAGCGGCACTGAAAAAGGGCTTACGCTCGGGACACCAGTAGC 76512
Query 18300 CCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCC 18359
|| || || | ||| || || || |||||| || ||| || ||| ||
Sbjct 76513 TCTTTTCGTACCTAACGAAAACGTCCGTCCGAACGACTACAAGGAGATGGACATGGTCCC 76572
Query 18360 GCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG-G 18418
|| || |||||| || || || ||| | |||||||||| || || | | |
Sbjct 76573 TCGTCCGGGACACGCTGATTATACGTACCAGATGAAGTACGGCA-CACGGGCAAGCAGTG 76631
Query 18419 GCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCG 18478
||||||| ||| | ||| || || ||| | ||||| || | || || | || |
Sbjct 76632 GCGGAGGTCGGGCCAGTGCGCGGGAAACCATTGGCCGCGTGGCTTCTGGTGCAATTGCTG 76691
Query 18479 AGAAATGGCTC 18489
|||| ||||||
Sbjct 76692 AGAAGTGGCTC 76702
Score = 98.7 bits (108), Expect = 1e-14
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 19056 GGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTT 19115
||||||| || ||||||||| ||||| | ||| | || | || ||||| ||||||
Sbjct 77129 GGCGGCATCGTCACGTGCGTGATCCGCAAGGCGCCCGTGGGGTTGGGTGAGCCTTGCTTT 77188
Query 19116 GACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATTC 19175
|||||||| |||| | ||| ||||| |||||| |||| ||||| || || || || ||
Sbjct 77189 GACAAGATGCAGGCTGTGCTGGCCCATGCCATGATGTCCATCCCAGCGACGAAAGGCTTT 77248
Query 19176 GAGATTGGCAGCGGGTT 19192
||||||||| |||||
Sbjct 77249 GAGATTGGCTCGGGGTT 77265
>seq77
Length=94558
Score = 113 bits (124), Expect = 6e-19
Identities = 163/225 (72%), Gaps = 10/225 (4%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || || | | ||||| |||||||| ||||||||||| || | |||
Sbjct 54729 GCTTGGCCAGCTCACCCGGAAGCATCAGACGCACGGCCGTCTGGATCTCACGGCT--CGA 54672
Query 1254403 TCGTGTTGCG--CTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460
| || | |||||| || ||| || ||||||||| | | ||||| ||||
Sbjct 54671 CAGCGTCGACTTCTTGTTGTAGCGCGAGAGCTTGCCGGCCTCCGAAGCAATGCGCTCGAA 54612
Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACAT--CGA-CTTGTTGGAGATGCCCACGTC 1254517
||||| |||| ||||||||||||| |||||| || |||| || |||||| ||
Sbjct 54611 AATGTCATTGATGAACGAGTTCATGATCGACATACCGCGCTTGCTG---ATGCCCGTCTC 54555
Query 1254518 GGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562
|||||||| || ||||||||||||||| ||| |||||||||
Sbjct 54554 CGGGTGCACTTGACGCAGCACCTTGTAGATGTACGTCGAGTACGA 54510
>seq409
Length=51020
Score = 100 bits (110), Expect = 3e-15
Identities = 169/239 (71%), Gaps = 7/239 (3%)
Strand=Plus/Plus
Query 1178255 GACCGGCCGATCGTGCACCGCGACCTCAAGTCGTCC-AACCTGCTCGTCGACGACAACTT 1178313
|| || |||||| ||||||| || |||||| |||| || || | || || | || ||
Sbjct 36563 GAGCGCCCGATCTTGCACCGGGATCTCAAGA-GTCCGAATCTATTGGTGGATAAGAATTT 36621
Query 1178314 CACAATCAAGGTGGCCGACTTTGGCTTTGCCCGCATCCGCGAGGACAATGC-GACGATGA 1178372
|| || || || | ||||||||| | || || || | | || ||| ||||||||
Sbjct 36622 CAACATTAAACTGTCGGACTTTGGCCTCGCGCGGGTCAAGGCGCACG-TGCAGACGATGA 36680
Query 1178373 CGCGG---TGCGGCACGCCGGCGTGGACGGCGCCCGAGGTCCTGCGCGGCGAGCGCTACT 1178429
| || || |||||| | ||||| ||||||||| ||| || || | | |||
Sbjct 36681 CAGGGAACTGTGGCACGGTGCAGTGGATGGCGCCCGAAGTCTTGGGCAACCAAAAGTACA 36740
Query 1178430 CGGAAAAGGCCGACGTCTACTCGTTTGGCGTCGTCATGTGGGAGATCATCACGCGCAAG 1178488
|||| ||||||||||| | |||||||| ||||||| |||||||| ||||| || ||
Sbjct 36741 CGGAGAAGGCCGACGTGTTTTCGTTTGGGATCGTCATTTGGGAGATTGTCACGGGCGAG 36799
>seq179
Length=46302
Score = 95.1 bits (104), Expect = 1e-13
Identities = 329/502 (66%), Gaps = 20/502 (4%)
Strand=Plus/Plus
Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCC 1627040
|| ||| ||||| |||||||||||||| || || | |||| || ||||| ||
Sbjct 20525 CTTGTCCACGGTGAACTGGATGGCGTCAGCTTTCGGGCGCCCACGCATGTAATACATACC 20584
Query 1627041 GGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGG-CGTCG 1627099
|||||||| || ||||||||| |||||||||||| | || | | |||||
Sbjct 20585 CGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGACGTCA-GCTTACTGATCGTCG 20643
Query 1627100 CGTCGGCGCAGTAC--AGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGC 1627157
|| |||| || | |||||||||||||||||| | || | | ||||| ||
Sbjct 20644 GATC--CGCAATATGAATATTGAGCGACTGGCTCTGGCAAATGTACGCGCCACGATCAGC 20701
Query 1627158 CGCCATGTCGATGGT-GAC--CCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTT 1627214
|| | || | | | ||| | | || | |||||||| |||||| | | ||||
Sbjct 20702 CGAGAGATCCAAGATCGACTTCTGCTTA---ATTTCCCACACTGTCTTGTACTTTTCCTT 20758
Query 1627215 GAGGTCGGGCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAG 1627274
|| || ||| | | ||| | || ||||| ||||| || || ||
Sbjct 20759 GACATCATTCGGGA--TGGTCTTAACCTTT----TGCACGGAGCCAC-CGTCGTTCAGAA 20811
Query 1627275 CCTG-TCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGC 1627333
|| | ||| | ||||||||||| | ||| | | |||| ||| | |||||
Sbjct 20812 TTTGGTTGCGGACTTCGGGCGTCCAGATGCCCAGGTCAATCAATTCCTTCATCAGGTACT 20871
Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393
||| || | ||||| ||||| | ||||||||||| |||| || || |||
Sbjct 20872 TGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGGTTGTACATATTCGACGTGTACG 20931
Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453
||| || |||| |||||||||| ||||| | ||||| ||||| ||||| ||||||
Sbjct 20932 GCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCGGCATTGGCGCCA 20991
Query 1627454 CGAGGAGCGAGTTGCGCAGGCC 1627475
|||| || |||||||| | |||
Sbjct 20992 CGAGCAGAGAGTTGCGAATGCC 21013
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106377393547711
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