Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq314 181 1e-39 seq69 174 2e-37 seq334 120 4e-21 seq19 116 5e-20 seq77 113 6e-19 seq409 100 3e-15 seq179 95.1 1e-13 >seq314 Length=49253 Score = 181 bits (200), Expect = 1e-39 Identities = 329/478 (69%), Gaps = 5/478 (1%) Strand=Plus/Minus Query 1573766 CGACTTTGGCCTCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGG 1573825 |||||||| |||||| | |||||||| || || || | | |||| | || || Sbjct 43408 CGACTTTGAAGCGCCGTGGGTGGAAAAGTACCGTCCACGCGTCTTGGCCGACGTCGTGGG 43349 Query 1573826 CAACGAGCACGCCGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCT 1573885 |||| || | |||| |||| || |||| || |||| ||||| ||||| | Sbjct 43348 CAACCGCAACACGATCGCGAGTCTCCAGGCCATGGCGCGCGCCGGCAACATGACCAACTT 43289 Query 1573886 CTTGCTGGCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGT 1573945 | || || || ||||| || ||||||||||||||||| ||| |||||| |||| | Sbjct 43288 GATCCTCGCCGGGCCGCCGGGAACGGGCAAGACCACGAGTATCTTGTGTCTCGCGCACGA 43229 Query 1573946 CCTCTTGGGCGCGGC---CGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCG 1574002 ||||| ||| || | | | | |||||||||| || || ||||||||||||||||| Sbjct 43228 GCTCTTAGGCCCGACGTATGTCAAACAGGCCGTGCTGGAGCTGAACGCGTCGGACGAGCG 43169 Query 1574003 CGGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGC 1574061 || ||||| || || | || |||||| ||| ||| | ||| || | Sbjct 43168 TGGGATCGACACGGTCCGGACGAAGATCAAGATGTTCGCGCAGCAGA-AAGTGACGCTCC 43110 Query 1574062 CGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCC 1574121 |||| || ||||||||| | | || ||||||||||| ||| | | ||| | || || | Sbjct 43109 CGCCAGGGCGCCACAAGCTCGTGATTCTCGACGAGGCGGACGCCATGACGGCTGCAGCTC 43050 Query 1574122 AGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGT 1574181 ||||||| || || || ||||| | | || |||||||| || || |||| Sbjct 43049 AGCAGGCACTTCGACGGACGATGGAGCTCTTCTCTGCTACCACGCGCTTCGCTCTCGCGT 42990 Query 1574182 GCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239 |||||| ||| ||| ||||| ||| || | || |||||||| ||||| |||||||| Sbjct 42989 GCAACAACTCGACGAAAGTCATTGAGCCCATTCAGAGTCGCTGTGCCATGCTGCGCTT 42932 >seq69 Length=63067 Score = 174 bits (192), Expect = 2e-37 Identities = 232/316 (73%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||||| |||||||||||| ||| |||||||||||| |||||||||| ||||||||| Sbjct 13401 GCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATC 13342 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCG-CAT-CCGAGCGACG 868808 | |||||||| || ||||| | | | | ||| || || |||||||| Sbjct 13341 ATGTCCATCCAGTCAAATGGGTTCTTTGCATGGAAAATCTT--CGACACGCCGAGCGAGT 13284 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 | ||||||||| || |||||||| ||||||||||||||||| | | ||||||||| | Sbjct 13283 ACAACAGGCGGTCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAA 13224 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 | ||| | || |||||||| || | ||||||||| | ||||||| || || ||| | Sbjct 13223 TCAGCTCAACGGGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGAA 13164 Query 868929 TGATCTGCCTGGGCAC-GTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 ||||| | ||| | | ||| | | ||||||| || ||| | | ||| | ||||| Sbjct 13163 TGATC-GTGTGGACGCGGTCCTCGGGCAGCTTGTTCACTAGCTTGGAGTACATGAGGCAC 13105 Query 868988 GCAAAGTCGCAGTGCA 869003 |||||||| ||||| Sbjct 13104 GCAAAGTCCGTGTGCA 13089 Score = 170 bits (188), Expect = 2e-36 Identities = 217/296 (73%), Gaps = 2/296 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||||||||| || || |||||||||||||| |||||| || | || | ||||| Sbjct 12806 CCGAGTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTT 12747 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || || | || |||||| |||||| ||| ||||| || ||||| || | Sbjct 12746 GCACTTCATTGCTAAAGTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAA 12687 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || || |||||||||||||| ||||| | ||| |||| | |||||| Sbjct 12686 AGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCT 12627 Query 869811 CGGTGTCG-GCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | ||| || | | ||| | |||||| || ||||||| ||| || || ||||| ||| Sbjct 12626 TGAGATCGTGCAC-CAAGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTG 12568 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 ||||||| ||| || | || | |||| || ||||| ||||||||||||||||| Sbjct 12567 TACATCTGCCACACGTCGTGCTCTTGGATCGGAAAGAGCACAAAGCGGTTGGGGTT 12512 Score = 129 bits (142), Expect = 7e-24 Identities = 200/283 (71%), Gaps = 11/283 (4%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || || || ||||| || | ||||| ||| |||||| |||||||| ||||||||| Sbjct 13086 CCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGCTTC 13027 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||||||||| | |||||| ||||||||| || ||||| ||||| | |||||| Sbjct 13026 TTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCAAAT 12967 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGAT----CCACTTCATCGC 869355 | | |||||||| || || ||| | | ||||| | | |||||| | ||| Sbjct 12966 GCCAGCAGCCGCTCCGC----GT-ACGAAG--ATACTTGTGGGTCGCACCACTTGAGCGC 12914 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415 ||| | ||| || || | || |||| | || || || ||||| | ||||| ||||| Sbjct 12913 CCAATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCCTT 12854 Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAG 869458 || | || || || | || ||||| || || ||||||||| Sbjct 12853 CTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAG 12811 >seq334 Length=35171 Score = 120 bits (132), Expect = 4e-21 Identities = 163/223 (73%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | ||||| |||||||| ||||||||||| || | ||| Sbjct 24244 GCTTGGCCAGCTCCCCAGGAAGCATCAGACGCACGGCCGTCTGGATCTCACGACT--CGA 24187 Query 1254403 TCGTGTTGCG--CTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 | || | |||||| || ||| || ||| ||||| | | ||||||| |||| Sbjct 24186 CAGCGTCGACTTCTTGTTGTAGCGCGAGAGCTTGCCCGCCTCCGAGGCGATGCGCTCGAA 24127 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTG-TTGGAGATGCCCACGTCGG 1254519 ||||| |||| ||||||||||||| |||||| | | | ||| ||||||| || | Sbjct 24126 GATGTCATTGATGAACGAGTTCATGATCGACAT-GCCGCGCTTGCTGATGCCCGTCTCCG 24068 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||||||| || ||||||||||||||| ||| ||||||||| Sbjct 24067 GGTGCACTTGACGCAGCACCTTGTAGATGTACGTCGAGTACGA 24025 >seq19 Length=176502 Score = 116 bits (128), Expect = 5e-20 Identities = 286/431 (66%), Gaps = 2/431 (0%) Strand=Plus/Plus Query 18060 CATGAGCACATTCGGCAAGGTATTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGG 18119 |||||| ||||||||| | | ||| | ||||| || || |||||||| ||| | ||| Sbjct 76273 CATGAGTACATTCGGCCGGTTCTTTCGTGTCACGACGTTCGGCGAGTCCCACTGCAAGGG 76332 Query 18120 CGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCA 18179 ||| ||||||||| |||||||||||||||| | | | | || | || || || ||||| Sbjct 76333 CGTGGGCTGCATCGTCGACGGCGTGCCGCCTTCCCTCGCCCTCACAGAAGCGGATATCCA 76392 Query 18180 GCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCC 18239 ||| ||| | || || || || |||||| || | || | ||||| || |||| Sbjct 76393 GCCGCAGCTCACCCGCCGTCGTCCTGGCCAGAGCACGCTCACGACGCCTCGGGACGAAAA 76452 Query 18240 CGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGG 18299 |||| || | ||| | ||||| || || || || |||||||| | || || | Sbjct 76453 AGATCAAGTGACGATCATGAGCGGCACTGAAAAAGGGCTTACGCTCGGGACACCAGTAGC 76512 Query 18300 CCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCC 18359 || || || | ||| || || || |||||| || ||| || ||| || Sbjct 76513 TCTTTTCGTACCTAACGAAAACGTCCGTCCGAACGACTACAAGGAGATGGACATGGTCCC 76572 Query 18360 GCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG-G 18418 || || |||||| || || || ||| | |||||||||| || || | | | Sbjct 76573 TCGTCCGGGACACGCTGATTATACGTACCAGATGAAGTACGGCA-CACGGGCAAGCAGTG 76631 Query 18419 GCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCG 18478 ||||||| ||| | ||| || || ||| | ||||| || | || || | || | Sbjct 76632 GCGGAGGTCGGGCCAGTGCGCGGGAAACCATTGGCCGCGTGGCTTCTGGTGCAATTGCTG 76691 Query 18479 AGAAATGGCTC 18489 |||| |||||| Sbjct 76692 AGAAGTGGCTC 76702 Score = 98.7 bits (108), Expect = 1e-14 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 19056 GGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTT 19115 ||||||| || ||||||||| ||||| | ||| | || | || ||||| |||||| Sbjct 77129 GGCGGCATCGTCACGTGCGTGATCCGCAAGGCGCCCGTGGGGTTGGGTGAGCCTTGCTTT 77188 Query 19116 GACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATTC 19175 |||||||| |||| | ||| ||||| |||||| |||| ||||| || || || || || Sbjct 77189 GACAAGATGCAGGCTGTGCTGGCCCATGCCATGATGTCCATCCCAGCGACGAAAGGCTTT 77248 Query 19176 GAGATTGGCAGCGGGTT 19192 ||||||||| ||||| Sbjct 77249 GAGATTGGCTCGGGGTT 77265 >seq77 Length=94558 Score = 113 bits (124), Expect = 6e-19 Identities = 163/225 (72%), Gaps = 10/225 (4%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | ||||| |||||||| ||||||||||| || | ||| Sbjct 54729 GCTTGGCCAGCTCACCCGGAAGCATCAGACGCACGGCCGTCTGGATCTCACGGCT--CGA 54672 Query 1254403 TCGTGTTGCG--CTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 | || | |||||| || ||| || ||||||||| | | ||||| |||| Sbjct 54671 CAGCGTCGACTTCTTGTTGTAGCGCGAGAGCTTGCCGGCCTCCGAAGCAATGCGCTCGAA 54612 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACAT--CGA-CTTGTTGGAGATGCCCACGTC 1254517 ||||| |||| ||||||||||||| |||||| || |||| || |||||| || Sbjct 54611 AATGTCATTGATGAACGAGTTCATGATCGACATACCGCGCTTGCTG---ATGCCCGTCTC 54555 Query 1254518 GGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 |||||||| || ||||||||||||||| ||| ||||||||| Sbjct 54554 CGGGTGCACTTGACGCAGCACCTTGTAGATGTACGTCGAGTACGA 54510 >seq409 Length=51020 Score = 100 bits (110), Expect = 3e-15 Identities = 169/239 (71%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 1178255 GACCGGCCGATCGTGCACCGCGACCTCAAGTCGTCC-AACCTGCTCGTCGACGACAACTT 1178313 || || |||||| ||||||| || |||||| |||| || || | || || | || || Sbjct 36563 GAGCGCCCGATCTTGCACCGGGATCTCAAGA-GTCCGAATCTATTGGTGGATAAGAATTT 36621 Query 1178314 CACAATCAAGGTGGCCGACTTTGGCTTTGCCCGCATCCGCGAGGACAATGC-GACGATGA 1178372 || || || || | ||||||||| | || || || | | || ||| |||||||| Sbjct 36622 CAACATTAAACTGTCGGACTTTGGCCTCGCGCGGGTCAAGGCGCACG-TGCAGACGATGA 36680 Query 1178373 CGCGG---TGCGGCACGCCGGCGTGGACGGCGCCCGAGGTCCTGCGCGGCGAGCGCTACT 1178429 | || || |||||| | ||||| ||||||||| ||| || || | | ||| Sbjct 36681 CAGGGAACTGTGGCACGGTGCAGTGGATGGCGCCCGAAGTCTTGGGCAACCAAAAGTACA 36740 Query 1178430 CGGAAAAGGCCGACGTCTACTCGTTTGGCGTCGTCATGTGGGAGATCATCACGCGCAAG 1178488 |||| ||||||||||| | |||||||| ||||||| |||||||| ||||| || || Sbjct 36741 CGGAGAAGGCCGACGTGTTTTCGTTTGGGATCGTCATTTGGGAGATTGTCACGGGCGAG 36799 >seq179 Length=46302 Score = 95.1 bits (104), Expect = 1e-13 Identities = 329/502 (66%), Gaps = 20/502 (4%) Strand=Plus/Plus Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCC 1627040 || ||| ||||| |||||||||||||| || || | |||| || ||||| || Sbjct 20525 CTTGTCCACGGTGAACTGGATGGCGTCAGCTTTCGGGCGCCCACGCATGTAATACATACC 20584 Query 1627041 GGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGG-CGTCG 1627099 |||||||| || ||||||||| |||||||||||| | || | | ||||| Sbjct 20585 CGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGACGTCA-GCTTACTGATCGTCG 20643 Query 1627100 CGTCGGCGCAGTAC--AGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGC 1627157 || |||| || | |||||||||||||||||| | || | | ||||| || Sbjct 20644 GATC--CGCAATATGAATATTGAGCGACTGGCTCTGGCAAATGTACGCGCCACGATCAGC 20701 Query 1627158 CGCCATGTCGATGGT-GAC--CCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTT 1627214 || | || | | | ||| | | || | |||||||| |||||| | | |||| Sbjct 20702 CGAGAGATCCAAGATCGACTTCTGCTTA---ATTTCCCACACTGTCTTGTACTTTTCCTT 20758 Query 1627215 GAGGTCGGGCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAG 1627274 || || ||| | | ||| | || ||||| ||||| || || || Sbjct 20759 GACATCATTCGGGA--TGGTCTTAACCTTT----TGCACGGAGCCAC-CGTCGTTCAGAA 20811 Query 1627275 CCTG-TCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGC 1627333 || | ||| | ||||||||||| | ||| | | |||| ||| | ||||| Sbjct 20812 TTTGGTTGCGGACTTCGGGCGTCCAGATGCCCAGGTCAATCAATTCCTTCATCAGGTACT 20871 Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393 ||| || | ||||| ||||| | ||||||||||| |||| || || ||| Sbjct 20872 TGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGGTTGTACATATTCGACGTGTACG 20931 Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453 ||| || |||| |||||||||| ||||| | ||||| ||||| ||||| |||||| Sbjct 20932 GCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCGGCATTGGCGCCA 20991 Query 1627454 CGAGGAGCGAGTTGCGCAGGCC 1627475 |||| || |||||||| | ||| Sbjct 20992 CGAGCAGAGAGTTGCGAATGCC 21013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106377393547711