Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq315 102 7e-17 seq1314 91.5 1e-13 seq179 86.0 6e-12 >seq315 Length=59289 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || ||| | || || || || || ||||| || || || | | Sbjct 38796 GATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCGTC 38737 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || |||||||| ||||| || || || || || || || Sbjct 38736 TGACTCGATTGACAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 38677 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||||||||| || |||||||| || | | || || || || Sbjct 38676 GCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGTACGCTGAGCGACTACAA 38617 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||||||||| || ||| ||||| | || ||||||| ||| Sbjct 38616 CATCCAGAAGGAATCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38568 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||| | || || || || || ||||| || || || | | Sbjct 38492 ATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCGTCT 38433 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || |||||||| ||||| || || || || || || || Sbjct 38432 GACTCGATTGACAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 38373 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || |||||||| || | | || || |||||| Sbjct 38372 CAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGTACGCTGAGTGACTATAAC 38313 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| ||||| | || ||||||| ||| Sbjct 38312 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38265 >seq1314 Length=13110 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||| | || || || || || ||||| || || || | || Sbjct 2256 ATGCAGATCTTTGTGAAGACGTTGACAGGCAAGACGATCACGCTGGACGTGGAGCCGTCC 2197 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || ||||| || || || ||||| || ||||| || || Sbjct 2196 GACAGCATTGACAATGTGAAGCAGAAGATTCAGGATAAGGAAGGCATTCCTCCTGACCAG 2137 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| ||||||||||||| || || ||||| || Sbjct 2136 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGA 2102 >seq179 Length=46302 Score = 86.0 bits (94), Expect = 6e-12 Identities = 289/446 (65%), Gaps = 7/446 (2%) Strand=Plus/Plus Query 139492 AGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT 139551 || || ||||| ||||| |||||||| ||||||| ||||| || | | ||||| ||| Sbjct 21852 AGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATCGCAAACGATCCTTTGCGT 21911 Query 139552 TTGCC---ACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCC 139608 ||||| ||||||||| |||| |||| | | | ||| || ||||| | ||| || Sbjct 21912 TTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAACACGCGAAGCATGGGGATA 21971 Query 139609 AGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGT 139668 | ||| ||| | || || |||| |||||| || || || |||| | || Sbjct 21972 ATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATTCGTGGCCCGGATATTGTGC 22031 Query 139669 ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGT-AATGTCT 139726 | | | ||||| || || || | |||| || || ||||| || | | || || | Sbjct 22032 ATACTAATGCCAATCCCTCCTGCCCATTTCGAAAT--GCACGCACATTGTTTCAAGGTAT 22089 Query 139727 CGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCG 139786 | || || ||| ||| || || | ||| | | | |||||| || || | ||| | Sbjct 22090 CATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAAGCACGAAGACAATTGGG 22149 Query 139787 GTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACA 139846 | | || ||||| |||||| || || |||| || || || | | | ||||| Sbjct 22150 GGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGTAAAAAACTTCTGCGACA 22209 Query 139847 TCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTC 139906 | ||||| || ||||| | || | ||| ||| | ||||| || | | ||||| Sbjct 22210 TTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATGGATGCCAATCGCGACTC 22269 Query 139907 GCATCAGCATATGTTGGATCCGTTCG 139932 | | | ||| ||||| ||||||| Sbjct 22270 GTAAAATCATCTGTTGCGGCCGTTCG 22295 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 138478 ATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGA 138537 ||||| || || ||||| || |||||| | | ||| || || |||| || || || Sbjct 20850 ATCAATTCCTTCATCAGGTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGG 20909 Query 138538 ACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTG 138597 ||| || || ||| | ||||||| ||| |||||||| ||||||||||| ||||| Sbjct 20910 TTGTACATATTCGACGTGTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTC 20969 Query 138598 GTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT-TCG 138656 | || |||||||| |||||| | ||||| || || | || | |||||| || Sbjct 20970 GAAGCCGTCGGCATTGGCGCCACGAGCAGAGAGTTGCGAATGCC---ATACTTGATCACG 21026 Query 138657 T--TCCTTGAGCGACGACCAGTCCCA 138680 | ||||| | | || ||||||||| Sbjct 21027 TTCTCCTTCAACTCCGTCCAGTCCCA 21052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449845395007240