Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq315 102 7e-17
seq1314 91.5 1e-13
seq179 86.0 6e-12
>seq315
Length=59289
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || | || ||| | || || || || || ||||| || || || | |
Sbjct 38796 GATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCGTC 38737
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||| | | || | || || || |||||||| ||||| || || || || || || ||
Sbjct 38736 TGACTCGATTGACAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 38677
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| || ||||||||||||| || |||||||| || | | || || || ||
Sbjct 38676 GCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGTACGCTGAGCGACTACAA 38617
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||| || ||||||||||| || ||| ||||| | || ||||||| |||
Sbjct 38616 CATCCAGAAGGAATCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38568
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | || ||| | || || || || || ||||| || || || | |
Sbjct 38492 ATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCGTCT 38433
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||| | | || | || || || |||||||| ||||| || || || || || || ||
Sbjct 38432 GACTCGATTGACAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 38373
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || ||||||||||||| || |||||||| || | | || || ||||||
Sbjct 38372 CAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGTACGCTGAGTGACTATAAC 38313
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || ||||| ||||| || ||| ||||| | || ||||||| |||
Sbjct 38312 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38265
>seq1314
Length=13110
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || ||| | || || || || || ||||| || || || | ||
Sbjct 2256 ATGCAGATCTTTGTGAAGACGTTGACAGGCAAGACGATCACGCTGGACGTGGAGCCGTCC 2197
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||| | || | || || || ||||| || || || ||||| || ||||| || ||
Sbjct 2196 GACAGCATTGACAATGTGAAGCAGAAGATTCAGGATAAGGAAGGCATTCCTCCTGACCAG 2137
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858
|| ||| ||||||||||||| || || ||||| ||
Sbjct 2136 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGA 2102
>seq179
Length=46302
Score = 86.0 bits (94), Expect = 6e-12
Identities = 289/446 (65%), Gaps = 7/446 (2%)
Strand=Plus/Plus
Query 139492 AGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT 139551
|| || ||||| ||||| |||||||| ||||||| ||||| || | | ||||| |||
Sbjct 21852 AGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATCGCAAACGATCCTTTGCGT 21911
Query 139552 TTGCC---ACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCC 139608
||||| ||||||||| |||| |||| | | | ||| || ||||| | ||| ||
Sbjct 21912 TTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAACACGCGAAGCATGGGGATA 21971
Query 139609 AGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGT 139668
| ||| ||| | || || |||| |||||| || || || |||| | ||
Sbjct 21972 ATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATTCGTGGCCCGGATATTGTGC 22031
Query 139669 ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGT-AATGTCT 139726
| | | ||||| || || || | |||| || || ||||| || | | || || |
Sbjct 22032 ATACTAATGCCAATCCCTCCTGCCCATTTCGAAAT--GCACGCACATTGTTTCAAGGTAT 22089
Query 139727 CGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCG 139786
| || || ||| ||| || || | ||| | | | |||||| || || | ||| |
Sbjct 22090 CATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAAGCACGAAGACAATTGGG 22149
Query 139787 GTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACA 139846
| | || ||||| |||||| || || |||| || || || | | | |||||
Sbjct 22150 GGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGTAAAAAACTTCTGCGACA 22209
Query 139847 TCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTC 139906
| ||||| || ||||| | || | ||| ||| | ||||| || | | |||||
Sbjct 22210 TTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATGGATGCCAATCGCGACTC 22269
Query 139907 GCATCAGCATATGTTGGATCCGTTCG 139932
| | | ||| ||||| |||||||
Sbjct 22270 GTAAAATCATCTGTTGCGGCCGTTCG 22295
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/206 (70%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 138478 ATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGA 138537
||||| || || ||||| || |||||| | | ||| || || |||| || || ||
Sbjct 20850 ATCAATTCCTTCATCAGGTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGG 20909
Query 138538 ACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTG 138597
||| || || ||| | ||||||| ||| |||||||| ||||||||||| |||||
Sbjct 20910 TTGTACATATTCGACGTGTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTC 20969
Query 138598 GTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT-TCG 138656
| || |||||||| |||||| | ||||| || || | || | |||||| ||
Sbjct 20970 GAAGCCGTCGGCATTGGCGCCACGAGCAGAGAGTTGCGAATGCC---ATACTTGATCACG 21026
Query 138657 T--TCCTTGAGCGACGACCAGTCCCA 138680
| ||||| | | || |||||||||
Sbjct 21027 TTCTCCTTCAACTCCGTCCAGTCCCA 21052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449845395007240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |