Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_022059.1
Length=77367
Score E
Sequences producing significant alignments: (Bits) Value
seq1434 114 6e-21
seq317 93.3 2e-14
>seq1434
Length=11778
Score = 114 bits (126), Expect = 6e-21
Identities = 355/547 (65%), Gaps = 7/547 (1%)
Strand=Plus/Plus
Query 67718 GCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTG 67777
||||| | ||||| || || ||| | | ||||| | || || ||| ||| || |||
Sbjct 10921 GCCGCATTTATCGATGCGGAGCATGCCTTGGACCCGCAATATGCTGCGAAGCTGGGTGTG 10980
Query 67778 GATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTT 67837
|||| | | | || || ||||| |||||||||||||| ||||||||||| |
Sbjct 10981 AATGTTCCCGAGTTATTGATTTCACAGCCTGACACTGGCGAGCAAGCCCTGGAGATTGCC 11040
Query 67838 GACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTG 67897
|| | || || |||||| || ||| | || || ||||| || || ||| ||
Sbjct 11041 GATATGCTGGTGCGCTCTGGCTCCGTGGATATCGTGGTGGTTGACTCCGTTGCCGCCTTG 11100
Query 67898 GTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGC 67957
|| || || || ||||||| || || || || ||| | || |||| || ||
Sbjct 11101 ACTCCACGTGCCGAAATCGAAGGCGAAATGGGTGATAGCCACATGGGTTTGCAAGCGCGG 11160
Query 67958 CTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGC--ACCAACACGCTCA 68015
||||||| || ||| ||||||| || || || | || | ||| ||||| || ||
Sbjct 11161 TTGATGTCACAAGCCCTGCGCAAACTTACGGGTAACAT--CAAGCGTACCAATACCCTGG 11218
Query 68016 CCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGA 68075
| | | || ||| | || ||| |||||| | || | |||| ||| |
Sbjct 11219 TGATCTTCATTAACCAGATCCGTATGAAAATCGGCGTCATG---TTCGGCAATCCTGAAA 11275
Query 68076 CCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGA 68135
||||||| || ||||| || ||| || ||| |||| || || ||||| ||||| | |
Sbjct 11276 CCACCACAGGCGGTAACGCACTGAAGTTTTACTCCTCTGTACGCTTGGATATCCGCCGCA 11335
Query 68136 TCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCA 68195
| | || || |||| ||||||| | ||| || || || || |||
Sbjct 11336 CGGGCGCCATCAAAAAAGGTGATGAGGTGATTGGCTCTGAAACCAAAGTCAAAGTCATCA 11395
Query 68196 AGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCA 68255
| |||||| ||||||| || | ||||||||||| ||| | ||||| |||||||
Sbjct 11396 AAAACAAGGTGGCGCCACCCTTCAAACAGGCTGAGTTCGACATAATGTACGGTGAGGGCA 11455
Query 68256 TTTCCCG 68262
| || ||
Sbjct 11456 TCTCGCG 11462
>seq317
Length=46315
Score = 93.3 bits (102), Expect = 2e-14
Identities = 134/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 67801 GCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGA 67860
|||||| ||| |||| || | || |||||||||| |||| || ||| ||| || |
Sbjct 31058 GCAGCCCGACTCTGGAGAAGAAGCGCTGGAGATCGCTGACACACTGATCAGGTCGGGAGC 30999
Query 67861 GGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGG 67920
|| | | |||| | ||| ||| || ||||| ||||| || || ||||| |||||
Sbjct 30998 AGTCGACCTTGTCGTGCTAGACAGTGTAGCTGCCCTCGTGCCCCGAGCAGAGCTGGAAGG 30939
Query 67921 GGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAA 67980
||| || || ||| ||| | | ||||| || ||||| ||| ||| || |||||||
Sbjct 30938 GGAAATGGGAGACCAGCAAATTGCTCTGCAGGCACGCCTAATGAGTCAAGCTCTGCGCAA 30879
Query 67981 GCTGACCGG 67989
|||||| ||
Sbjct 30878 GCTGACTGG 30870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 247421604402864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |