Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_022096.1
Length=258139
Score E
Sequences producing significant alignments: (Bits) Value
seq1684 123 4e-23
>seq1684
Length=9696
Score = 123 bits (136), Expect = 4e-23
Identities = 203/293 (69%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 35465 CTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCCTCGTCACTCTC 35524
||||||||||||||| ||||| ||||| ||||| | |||| || ||| || ||
Sbjct 2450 CTGGCCCTGGTATTTGCCGCCACGATCTTTGTAACTGGTTTCACAAATCTCATCTGATTC 2509
Query 35525 GAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGT 35584
|| ||||| | || || |||||| || || | || || || || ||
Sbjct 2510 AAAGAACAGGACTTGGGCGCAGCCTTCGCCTGCATAAATCTTGGCGGGTAGAGGAGTCGT 2569
Query 35585 GTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGAC 35644
||| |||||||| || || |||| ||||||||| || ||||| | ||| || ||||| ||
Sbjct 2570 GTTACTGAACTCAAGTGTGACATAACCTTCCCATTCCGGTTCAAACGGTGTGACGTTCAC 2629
Query 35645 GATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGG 35704
||||| || || || || || || ||| |||| || ||| | ||| ||| ||
Sbjct 2630 AATGATGCCGCAACGTGCATATGTTGACTTGCCCAGGCATACCGTTAACACGGAGCGTGG 2689
Query 35705 AATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCA 35757
||| ||||| ||||| || ||||| ||||| || || ||| || || ||||
Sbjct 2690 AATACGGAAATATTCTACTGTGCGCGCCAGTGCAAACGAGTTGGGGGGGATCA 2742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 825820962679320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |