Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq314 188 1e-41 seq69 176 7e-38 seq77 141 1e-27 seq334 132 8e-25 seq179 102 1e-15 seq316 89.7 8e-12 >seq314 Length=49253 Score = 188 bits (208), Expect = 1e-41 Identities = 342/498 (69%), Gaps = 7/498 (1%) Strand=Plus/Minus Query 2018901 GCCGACTTTGGCCTCCCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTG 2018960 |||||||||| |||||| | ||||||||||| || || | | |||| ||||| Sbjct 43410 GCCGACTTTGAAGCGCCGTGGGTGGAAAAGTACCGTCCACGCGTCTTGGCCGACGTCGTG 43351 Query 2018961 GGCAACGAGCACGCCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAAC 2019020 |||||| || | | || ||| |||| |||| || |||||||||| ||||| Sbjct 43350 GGCAACCGCAACACGATCGCGAGTCTCCAGGCCATGGCGCGCGCCGGCAACATGACCAAC 43291 Query 2019021 CTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGC 2019080 | | || || || ||||| || ||||||||||||||||| ||| ||| || |||| | Sbjct 43290 TTGATCCTCGCCGGGCCGCCGGGAACGGGCAAGACCACGAGTATCTTGTGTCTCGCGCAC 43231 Query 2019081 GTGCTCTTGGGCGCGGC---CGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAG 2019137 | |||||| ||| || | | | | |||||||||| || || || ||||| |||||| Sbjct 43230 GAGCTCTTAGGCCCGACGTATGTCAAACAGGCCGTGCTGGAGCTGAACGCGTCGGACGAG 43171 Query 2019138 CGCGGCGTGGACGTCGTGCGTAGAATCATCAAG--CATCACGCTTCGAAAAGAATCGACC 2019195 || || | ||| || || | | |||||| || ||| | |||| || | Sbjct 43170 CGTGGGATCGACACGGTCCGGACGAAGATCAAGATGTTCGCGCAGCAGAAAGTGACG--C 43113 Query 2019196 TGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGG 2019255 | ||||| || ||||||||| | | || ||||| ||||| ||| | | ||| | || | Sbjct 43112 TCCCGCCAGGGCGCCACAAGCTCGTGATTCTCGACGAGGCGGACGCCATGACGGCTGCAG 43053 Query 2019256 CCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGG 2019315 | |||||||| || ||| ||| ||||| | | | || ||||| || || || | Sbjct 43052 CTCAGCAGGCACTTCGACGGACGATGGAGCTCTTCTCTGCTACCACGCGCTTCGCTCTCG 42993 Query 2019316 CCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCT 2019375 | ||||||| ||| ||| ||||| || || | ||||| || || ||||| |||||| Sbjct 42992 CGTGCAACAACTCGACGAAAGTCATTGAGCCCATTCAGAGTCGCTGTGCCATGCTGCGCT 42933 Query 2019376 TTGCGCGCCTCACCGACG 2019393 | |||| || | |||| Sbjct 42932 TCACGCGGCTGTCGGACG 42915 >seq69 Length=63067 Score = 176 bits (194), Expect = 7e-38 Identities = 235/326 (72%), Gaps = 3/326 (1%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || || || ||||| || | ||||| |||| |||||| |||||||| ||||||||| Sbjct 13086 CCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGCTTC 13027 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||||||||| | ||||| ||||||||| || ||||| ||||| | |||||| Sbjct 13026 TTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCAAAT 12967 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | | |||||||| || | | | | | | || | |||||| | |||||| Sbjct 12966 GCCAGCAGCCGCTCCGCGTACGAAGATA---CTTGTGGGTCGCACCACTTGAGCGCCCAA 12910 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | || || || | || | || | || || || ||||| | ||||| |||||||| Sbjct 12909 TTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCCTTCTCC 12850 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 || || || | ||| ||||| ||||| ||||| ||| || |||||||||||||| Sbjct 12849 GTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATGTTTTCA 12790 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCA 794666 || ||||||||||||||||||||||| Sbjct 12789 ATCGCGATCTGGAAGCCATAAAAGCA 12764 Score = 172 bits (190), Expect = 9e-37 Identities = 229/313 (73%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || || ||||||| ||||||||||| ||| |||||||||||| |||||||||| ||| Sbjct 13407 ACACCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGC 13348 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC-CCGAG 794011 ||||||| |||||||| || ||||| | || | |||| ||| ||||| Sbjct 13347 GAGATCATGTCCATCCAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGA-CACGCCGAG 13289 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 ||| | ||||||||| || || || |||||||||||||||||||| || | |||||| Sbjct 13288 CGAGTACAACAGGCGGTCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCAT 13229 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 ||| || ||| | ||||||||||| || | |||||||| | ||||||| || || || Sbjct 13228 GCCAATCAGCTCAACGGGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTC 13169 Query 794132 GATGATGATCTGCCTGGGCAC-GTCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGCA 794190 | |||||| | ||| | | ||| | | |||||| || ||| | | ||| | | Sbjct 13168 GCGAATGATC-GTGTGGACGCGGTCCTCGGGCAGCTTGTTCACTAGCTTGGAGTACATGA 13110 Query 794191 GGCAGGCAAAGTC 794203 |||| |||||||| Sbjct 13109 GGCACGCAAAGTC 13097 Score = 131 bits (144), Expect = 3e-24 Identities = 192/266 (72%), Gaps = 12/266 (5%) Strand=Plus/Minus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGC 796199 ||| |||| || || || ||||| || || || | ||| |||||| ||||| Sbjct 12769 AAAGCACCGAGCTTCCGGCACTTGCACTTCATTGCTAAAGTTCATGGCCAGATTCTCGTT 12710 Query 796200 CACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTC 796259 ||| ||||| || ||||| || || |||||||| || |||||||||||||||||||| | Sbjct 12709 CACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATT 12650 Query 796260 GTCGCTGAGCGAGACCCAGTGGACCGTG---TCG-GCGCCGAGGTCGACCTCCTCGGCGG 796315 ||| |||| |||||| || || ||| || || | ||| | |||||| || | Sbjct 12649 GTCCGTGAGGTTCGCCCAGT---CCTTGAGATCGTGCACC-AAGTCTAGCTCCTCAGCAG 12594 Query 796316 TCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT--TGGTAGCGGATGGG 796373 |||| || || || || ||||| |||||||||| ||| | ||| || | |||| || Sbjct 12593 TCCAGAACGAAGCTTCCGCCTTCTTGTACATCTGCCACA--CGTCGTGCTCTTGGATCGG 12536 Query 796374 GAACAGAACAAAGCGATTGGGGTTCT 796399 || || |||||||| |||||||||| Sbjct 12535 AAAGAGCACAAAGCGGTTGGGGTTCT 12510 >seq77 Length=94558 Score = 141 bits (156), Expect = 1e-27 Identities = 189/261 (72%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| |||||||| || || || || ||||||||| ||||||| || || | | Sbjct 54768 TGAACTTGGTCACGGCCTTCGTGCCTTCCGACACGGCGTGCTTGGCCAGCTCACCCGGAA 54709 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTG--CGCTTGTTAGT 1485587 ||||| |||||||| ||||||||||| ||| | ||| | || | |||||| Sbjct 54708 GCATCAGACGCACGGCCGTCTGGATCTCACGGCT--CGACAGCGTCGACTTCTTGTTGTA 54651 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||||| || ||||||||| | | ||||| |||| ||||| |||| |||||||| Sbjct 54650 GCGCGAGAGCTTGCCGGCCTCCGAAGCAATGCGCTCGAAAATGTCATTGATGAACGAGTT 54591 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||||||||| ||| ||||||| || |||||||| || |||||||| Sbjct 54590 CATGATCGACATACCGCGCTTGCTGATGCCCGTCTCCGGGTGCACTTGACGCAGCACCTT 54531 Query 1485708 GTAAACAAAGGACGAGTACGA 1485728 ||| | | | ||||||||| Sbjct 54530 GTAGATGTACGTCGAGTACGA 54510 >seq334 Length=35171 Score = 132 bits (146), Expect = 8e-25 Identities = 187/261 (72%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || || || || || |||||| ||||||| || || | | Sbjct 24283 TGAACTTGGTCACAGCCTTCGTGCCTTCCGACACAGCGTGCTTGGCCAGCTCCCCAGGAA 24224 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCG--CTTGTTAGT 1485587 ||||| |||||||| ||||||||||| || | ||| | || | |||||| Sbjct 24223 GCATCAGACGCACGGCCGTCTGGATCTCACGACT--CGACAGCGTCGACTTCTTGTTGTA 24166 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||||| || ||| ||||| | | ||||||| |||| ||||| |||| |||||||| Sbjct 24165 GCGCGAGAGCTTGCCCGCCTCCGAGGCGATGCGCTCGAAGATGTCATTGATGAACGAGTT 24106 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||||||||| ||| ||||||| || |||||||| || |||||||| Sbjct 24105 CATGATCGACATGCCGCGCTTGCTGATGCCCGTCTCCGGGTGCACTTGACGCAGCACCTT 24046 Query 1485708 GTAAACAAAGGACGAGTACGA 1485728 ||| | | | ||||||||| Sbjct 24045 GTAGATGTACGTCGAGTACGA 24025 >seq179 Length=46302 Score = 102 bits (112), Expect = 1e-15 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 2069546 GGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGT 2069605 ||| ||| | ||||||||||| | ||| | | |||| || | ||||| || Sbjct 20815 GGTTGCGGACTTCGGGCGTCCAGATGCCCAGGTCAATCAATTCCTTCATCAGGTACTTGT 20874 Query 2069606 TGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCT 2069665 | || | ||||| ||||| | ||||||||||| |||| || || |||| || Sbjct 20875 TTACAATCGTAAACTCGCCAGCCAGCACGCGGCGGTTGTACATATTCGACGTGTACGGCT 20934 Query 2069666 CGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGA 2069725 | || |||| |||||||||| ||||| | ||||| ||||| ||||| ||||||||| Sbjct 20935 CAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCGGCATTGGCGCCACGA 20994 Query 2069726 GCAGCGAGTTGCGCAGGCCGTACT 2069749 |||| |||||||| | ||| |||| Sbjct 20995 GCAGAGAGTTGCGAATGCCATACT 21018 >seq316 Length=36131 Score = 89.7 bits (98), Expect = 8e-12 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 118805 GGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGA 118864 ||| | |||||| | |||| ||||||| | || || | || ||||||||| |||||||| Sbjct 29832 GGGGATGTAGCCAATGTGCACCTTGCCCGTGAACGGGACCATATGGTGCTCACACATGGA 29773 Query 118865 GAAAAAGTCAATGTCGCGCACGGTCACCATCTCGCCCGACGTC-TCGGCAAAGAGGGCGT 118923 | | | ||||||||| ||||| ||||||||||| | ||| || |||| | ||| | Sbjct 29772 GTACAGGTCAATGTCTCGCACAATCACCATCTCG-TCATGGTCTTCTTCAAAAACGGCTT 29714 Query 118924 CGCCGACGGCCTCGGCCAGGGTCAGGCGGTGGCCGCGCGTGCGCTCCACCATGGCCTTGG 118983 || | |||| || | | || ||| || || ||| | || || ||||||| Sbjct 29713 CGTTCAGCACCTCAGCTAAGCTCTGGCCGTACCCCTTGGTGTTATACAGCAACGCCTTGG 29654 Query 118984 CCACGCGCATGGGCGT 118999 ||| ||||||||||| Sbjct 29653 CCATCCGCATGGGCGT 29638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915258924950237