Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_022343.1 Length=159991 Score E Sequences producing significant alignments: (Bits) Value seq6517 118 1e-21 seq2003 116 4e-21 >seq6517 Length=1260 Score = 118 bits (130), Expect = 1e-21 Identities = 176/247 (71%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 143995 TGGCTCTGTTGCAGCCACCGAACACGCCGTGATGTGCATGGGCACGAAGGATGGCGAGTT 144054 ||||||||| ||||| ||||| ||| | |||||||||||||| || || || ||||| || Sbjct 718 TGGCTCTGTGGCAGCAACCGAGCACTCTGTGATGTGCATGGGTACAAATGAGGGCGAATT 659 Query 144055 CGAAACCTTCGAGCGCCTGATCTCTAAAGTCTATCCGGACGGGATTGTCAGTATCGTTTC 144114 ||||| ||| | |||||||| | |||| |||||| | || ||||| ||| || || Sbjct 658 TGAAACTTTCAAACGCCTGATTACAGAAGTGTATCCGAAAGGTATTGTTTCTATTGTGTC 599 Query 144115 TGATGCATGGGATTACTGGCAGGTCATTGA-CGACTATCTGCCGCGCCTCAAAGATATCA 144173 ||| | ||||| | ||| | || ||| | ||| || | || | | ||| || | Sbjct 598 TGACACTTGGGACTTATGGAAAGT-ATTAACCGAATACTTACCTGCCTTAAAAAATGAAA 540 Query 144174 TCATGGCGCGTAATGGCAAAGTTGTGATCCGTCCCGACTCTGGTGACCCGGTGCATATCG 144233 | || | || |||||||| ||||| || || || || || ||||| ||| |||| Sbjct 539 TAGTGAATAGAAACGGCAAAGTAGTGATTCGACCGGATTCGGGCGACCCTGTGGATATTA 480 Query 144234 TCGGTGG 144240 || |||| Sbjct 479 TCTGTGG 473 >seq2003 Length=7520 Score = 116 bits (128), Expect = 4e-21 Identities = 565/883 (64%), Gaps = 37/883 (4%) Strand=Plus/Plus Query 14609 ATCCAGGCGGCTGCGTCTCTCATCTCTGTAGAAAAGCCGAACTATCAGTATGTCGCAGCG 14668 ||| || | ||||| || ||||||| ||||| |||| | || |||||| | || || Sbjct 6251 ATCAAGTCCGCTGCTGACCTGATCTCTGAAGAAACGCCGGATTACCAGTATCTGGCGGCA 6310 Query 14669 CGTCTGAAGTCATACGATCTCCGCAAAATCGCCTATGGCCAGTACAAGCCACCCCATCTG 14728 || ||| | | | || ||||| ||||| |||||||||| |||| || || ||| Sbjct 6311 CGCCTGTCGATTTTTCACCTGCGCAAGATCGCGTATGGCCAGTTTGAGCCGCCACACCTG 6370 Query 14729 CTGGATATCTTTGTCAAGAACATCA---AACTCGGTAAATACGACCGGGAATTCCTGGAT 14785 | || | ||||| | | | | ||||| ||||| |||| | | || ||| | Sbjct 6371 TTCGA---CCATGTCACTGGCCTGACTGAGCTCGGCAAATATGACCCGCATTTGCTGCGT 6427 Query 14786 CTGTATACCACTGAAGAGTTTGATGAACTTCAGGCCACCATCAACCACAAACGCGATAAG 14845 || ||| |||||| || |||| | | | | | ||| ||||| ||||| | | Sbjct 6428 GATTACACCCGTGAAGAATTCGATGTATTGAATGGCTACATTGACCACTGGCGCGACATG 6487 Query 14846 AACTTCACCTGGGCGGCCATGGGCCAGCTGACTGAG---AAGTACCTGTTGCGTGACCGT 14902 || ||| | | ||||| || | ||| | |||| || |||||| ||| ||||| Sbjct 6488 AATTTCTCTTATGCGGC---GGTCAAGCAGCTTGAGGGCAAATACCTGGTGCAAAACCGT 6544 Query 14903 TCTCAAAAAGACAAGAAAGTCTATTGTGAAACTCCTCAGGTCATGTATATGGCGATTGCT 14962 ||| ||| ||| |||| || | || ||| | | || || | | || Sbjct 6545 G-TCAC-----CAAAAAAATCTAC---GAGAGCCCGCAGTTTCTCTACATCCTGGTGGCG 6595 Query 14963 ATGGCGCTGTTCTCTAATTGGGACAA-GGCCAGCCGC--CTGGATATGATCAAAAAGTTC 15019 ||| ||||| | || | |||| |||||| ||| || || ||||| || Sbjct 6596 ATGAGCCTGTTTGCCAACT---ACAAAGGCCAGGCGCGCCTCGAGTACATCAAGCGCTTT 6652 Query 15020 TACAATTATGCCAGCACAGGCAAATTCAGTCTTCCGACCCCCATCATGGCAGGCGTTCGT 15079 ||| || | || ||| || || || || || |||||||| || || ||| Sbjct 6653 TACGATGCGGTGTCTACCTTCAAGATCTCGCTGCCTACGCCTATCATGGCCGGTGTGCGT 6712 Query 15080 ACTCCTACCCGTCAGTTCAGTTCATGCGTTCTGATCAAAACTGGCGACACGCTGGATTCC 15139 |||||||| || |||||||| || ||||| |||||| | || |||| ||||| | Sbjct 6713 ACTCCTACGCGCCAGTTCAGCTCCTGCGTACTGATCGAGTGTGATGACAGCCTGGACAGC 6772 Query 15140 ATCAACGCAACCGCCAAATCTATCGTAGACTATGT-GAGCAAGCGTGCTGGCATCGGATT 15198 ||||| |||||| ||| | ||||| | ||||| |||| || || ||||| || | Sbjct 6773 ATCAATGCAACCACCAGCGCGATCGTGAAGTATGTCTCGCAA-CGCGCCGGCATAGGCGT 6831 Query 15199 TGACGTTGGTGCAATTCGCGGTATCGGCAGTCCTATCCGGGGCGGAGAGATGGTCCACAC 15258 ||| || || |||| | ||||| || || ||||| || | || || Sbjct 6832 CAACGCGGGCCGCATCCGCGCGCTGGGCAGCGAGATACGTGGCGGCGAAGCGCAACATAC 6891 Query 15259 TGGTCTGGTTCCATTCATCAAATATCTG-ACCGG--GGCACTGAAGTCGTGCTCTCAGGG 15315 ||| | || ||| |||| ||| || | || |||| || ||||| ||||| Sbjct 6892 CGGTTGCCTGCCGTTCTACAAA---CTGTTCCAGTCTGCGGTGAAATCCTGCTCGCAGGG 6948 Query 15316 CGGTATTCGCGGTGGTGCTGCTAC-AGCTTATATCCCGCTGTGGCATTACCAGTTCGACG 15374 |||| | || ||||| || || || || || |||| ||||||| | |||| Sbjct 6949 CGGTGTGCGGGGTGGGGCGGCGACGTTGTTCTA-CCCGTTGTGGCACCTTGAAGTCGAAT 7007 Query 15375 ATGTCGTTGTGTTGAAGAACAACCGTGGTACGGAAGAAAACCGCGAGCGCCGTATCGACT 15434 | | ||| |||| |||||||| || ||||||||||| | ||| | | |||| | Sbjct 7008 CACTGCTGGTGCTGAAAAACAACCGCGGCGTAGAAGAAAACCGTGTGCGTCATCTCGATT 7067 Query 15435 ATGGTATTCAGATCAACCGCGTCATGTTTGAACGTCTGGTCAA 15477 |||| | |||||||||||| | |||| | || ||| |||| Sbjct 7068 ATGGCGTGCAGATCAACCGCCTGATGTACCAGCGCCTGATCAA 7110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511783806994680