Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_022920.1
Length=139738
Score E
Sequences producing significant alignments: (Bits) Value
seq6517 136 4e-27
>seq6517
Length=1260
Score = 136 bits (150), Expect = 4e-27
Identities = 378/572 (66%), Gaps = 17/572 (3%)
Strand=Plus/Minus
Query 133803 TATTACAATGCAGACGTAGAGAAGGAAATGGTTGTTGCTTCTATCCCTGCTACTGAGCAC 133862
||||||||||| || ||| | || | || | || ||| | | || || ||||||
Sbjct 753 TATTACAATGCTGATTCAGACACCGAGCTTGTGGGTGGCTCTGTGGCAGCAACCGAGCAC 694
Query 133863 TCAGTAATGTGCGCAAATGGTAATTATGAAACCATGGATGAGTATGAAACATATAAACGT 133922
|| || |||||| | |||| |||| || || | |||||| | |||||
Sbjct 693 TCTGTGATGTGC---ATGGGTACAAATGA------GGGCGAATTTGAAACTTTCAAACGC 643
Query 133923 ATGTTAACAGAAATATATCCAACAGGCATTTTCTCTATTGTATCTGATACTTGGGACTTT 133982
|| | |||||| | ||||| | ||| ||| | |||||||| ||||| |||||||||||
Sbjct 642 CTGATTACAGAAGTGTATCCGAAAGGTATTGTTTCTATTGTGTCTGACACTTGGGACTTA 583
Query 133983 TGG--GGTAATATGACTAAAACTTTACCTAGATTAAAGGATATTATTATGGAACGTGATG 134040
||| ||| || || || |||||| ||||| || || || | | | |
Sbjct 582 TGGAAAGTATTA--ACCGAATACTTACCTGCCTTAAAAAATGAAATAGTGAATAGAAACG 525
Query 134041 GTAAAGTAGTAATCAGACCTGATAGTGGAGACCCTGTTAAAATTATTTGCGGAGACCCTG 134100
| |||||||| || |||| ||| || |||||||| | ||||| || || | ||||
Sbjct 524 GCAAAGTAGTGATTCGACCGGATTCGGGCGACCCTGTGGATATTATCTGTGGCAATCCTG 465
Query 134101 ATGCAGATACTGAATATGAACGTAAAGGTGCAGTAGAAGTACTTTGGGATACATTTGGAG 134160
| | | | || | ||| ||||| | | || | | |||||||| || || |
Sbjct 464 ACGGAAAAACCACCGAAGAAAAAAAAGGGGTTATTGAGTTGTTATGGGATACCTTCGGTG 405
Query 134161 GTACTGAAACTGAAAAAGGGTACAAAGTATTA-GATGAACACGTAGGATTAATTTATGGA 134219
||| | || |||||| || |||| |||| | ||| |||| ||||||||
Sbjct 404 GTATCACCAATGCAAAAGGCTATAAAGAATTACTACCCACA-ATAGGGGCCATTTATGGC 346
Query 134220 GACTCTATTAACTAT-GAACGTGCTCAACAAATTTGTGAAGGATTAAAAGAAAAAGGTTT 134278
|| || || ||| | | | ||| |||||| |||||| ||||||| ||||||| ||
Sbjct 345 GATAGCATCAA-TATAGCAAGAGCTACACAAATCTGTGAACGATTAAAGCAAAAAGGCTT 287
Query 134279 TGCAAGTATTAATGTTGTATTAGGTGTAGGTAGTTTCTCTTACCAATTTAATACTCGTGA 134338
||| || |||||||| |||| || || | |||| |||| ||||| |||||
Sbjct 286 TGCCTCTACCAATGTTGTGCTAGGCGTTGGCTCATATACTTATCAATACAATACCCGTGA 227
Query 134339 TACTCACGGGTTTGCAATCAAAGCAACGTATG 134370
||| ||| ||||| || ||||| || ||||
Sbjct 226 TACCTTCGGCTTTGCCATGAAAGCCACTTATG 195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 446981727338640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |