Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_022920.1 Length=139738 Score E Sequences producing significant alignments: (Bits) Value seq6517 136 4e-27 >seq6517 Length=1260 Score = 136 bits (150), Expect = 4e-27 Identities = 378/572 (66%), Gaps = 17/572 (3%) Strand=Plus/Minus Query 133803 TATTACAATGCAGACGTAGAGAAGGAAATGGTTGTTGCTTCTATCCCTGCTACTGAGCAC 133862 ||||||||||| || ||| | || | || | || ||| | | || || |||||| Sbjct 753 TATTACAATGCTGATTCAGACACCGAGCTTGTGGGTGGCTCTGTGGCAGCAACCGAGCAC 694 Query 133863 TCAGTAATGTGCGCAAATGGTAATTATGAAACCATGGATGAGTATGAAACATATAAACGT 133922 || || |||||| | |||| |||| || || | |||||| | ||||| Sbjct 693 TCTGTGATGTGC---ATGGGTACAAATGA------GGGCGAATTTGAAACTTTCAAACGC 643 Query 133923 ATGTTAACAGAAATATATCCAACAGGCATTTTCTCTATTGTATCTGATACTTGGGACTTT 133982 || | |||||| | ||||| | ||| ||| | |||||||| ||||| ||||||||||| Sbjct 642 CTGATTACAGAAGTGTATCCGAAAGGTATTGTTTCTATTGTGTCTGACACTTGGGACTTA 583 Query 133983 TGG--GGTAATATGACTAAAACTTTACCTAGATTAAAGGATATTATTATGGAACGTGATG 134040 ||| ||| || || || |||||| ||||| || || || | | | | Sbjct 582 TGGAAAGTATTA--ACCGAATACTTACCTGCCTTAAAAAATGAAATAGTGAATAGAAACG 525 Query 134041 GTAAAGTAGTAATCAGACCTGATAGTGGAGACCCTGTTAAAATTATTTGCGGAGACCCTG 134100 | |||||||| || |||| ||| || |||||||| | ||||| || || | |||| Sbjct 524 GCAAAGTAGTGATTCGACCGGATTCGGGCGACCCTGTGGATATTATCTGTGGCAATCCTG 465 Query 134101 ATGCAGATACTGAATATGAACGTAAAGGTGCAGTAGAAGTACTTTGGGATACATTTGGAG 134160 | | | | || | ||| ||||| | | || | | |||||||| || || | Sbjct 464 ACGGAAAAACCACCGAAGAAAAAAAAGGGGTTATTGAGTTGTTATGGGATACCTTCGGTG 405 Query 134161 GTACTGAAACTGAAAAAGGGTACAAAGTATTA-GATGAACACGTAGGATTAATTTATGGA 134219 ||| | || |||||| || |||| |||| | ||| |||| |||||||| Sbjct 404 GTATCACCAATGCAAAAGGCTATAAAGAATTACTACCCACA-ATAGGGGCCATTTATGGC 346 Query 134220 GACTCTATTAACTAT-GAACGTGCTCAACAAATTTGTGAAGGATTAAAAGAAAAAGGTTT 134278 || || || ||| | | | ||| |||||| |||||| ||||||| ||||||| || Sbjct 345 GATAGCATCAA-TATAGCAAGAGCTACACAAATCTGTGAACGATTAAAGCAAAAAGGCTT 287 Query 134279 TGCAAGTATTAATGTTGTATTAGGTGTAGGTAGTTTCTCTTACCAATTTAATACTCGTGA 134338 ||| || |||||||| |||| || || | |||| |||| ||||| ||||| Sbjct 286 TGCCTCTACCAATGTTGTGCTAGGCGTTGGCTCATATACTTATCAATACAATACCCGTGA 227 Query 134339 TACTCACGGGTTTGCAATCAAAGCAACGTATG 134370 ||| ||| ||||| || ||||| || |||| Sbjct 226 TACCTTCGGCTTTGCCATGAAAGCCACTTATG 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446981727338640