Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_022969.1 Length=76217 Score E Sequences producing significant alignments: (Bits) Value seq1434 183 1e-41 seq317 98.7 5e-16 >seq1434 Length=11778 Score = 183 bits (202), Expect = 1e-41 Identities = 357/524 (68%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 66352 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66411 ||||| |||||||||||||| ||||||||||| | || | || || |||||| Sbjct 11005 CAGCCTGACACTGGCGAGCAAGCCCTGGAGATTGCCGATATGCTGGTGCGCTCTGGCTCC 11064 Query 66412 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 66471 || ||||| || |||||||| || || ||| || || || ||||| |||||||| Sbjct 11065 GTGGATATCGTGGTGGTTGACTCCGTTGCCGCCTTGACTCCACGTGCCGAAATCGAAGGC 11124 Query 66472 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 66531 || || || || || ||| | || |||| ||||| | ||||| || ||| ||||||| Sbjct 11125 GAAATGGGTGATAGCCACATGGGTTTGCAAGCGCGGTTGATGTCACAAGCCCTGCGCAAA 11184 Query 66532 CTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 66591 || || || | |||| | ||||| || ||| | ||| | |||||| | || | Sbjct 11185 CTTACGGGTAACATCAAGCGTACCAATACCCTGGTGATCTTCATTAACCAGATCCGTATG 11244 Query 66592 AAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAGG 66651 || |||||| | || | |||| ||| |||||||| ||||| || || ||| | Sbjct 11245 AAAATCGGCGTCATG---TTCGGCAATCCTGAAACCACCACAGGCGGTAACGCACTGAAG 11301 Query 66652 TTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAG 66711 || ||| |||| || ||| ||||| |||| |||| | | || || |||| |||||| Sbjct 11302 TTTTACTCCTCTGTACGCTTGGATATCCGCCGCACGGGCGCCATCAAAAAAGGTGATGAG 11361 Query 66712 GCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGC 66771 | | ||| ||| || || ||| |||| |||||| |||| || || | Sbjct 11362 GTGATTGGCTCTGAAACCAAAGTCAAAGTCATCAAAAACAAGGTGGCGCCACCCTTCAAA 11421 Query 66772 AACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTG-AGGTCGAACTCCTCGA 66830 | || |||||| | | ||||||| ||||||||||||||| |||| || | |||| Sbjct 11422 CAGGCTGAGTTCGACATAATGTACGGTGAGGGCATCTCGCGTTTAGGT-GAGGTGATCGA 11480 Query 66831 CCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT 66874 |||| | | ||||| |||||||||||||||||| Sbjct 11481 ACTGGGCACCAACCTTAAACTGGTAGAGAAGTCGGGCGCCTGGT 11524 >seq317 Length=46315 Score = 98.7 bits (108), Expect = 5e-16 Identities = 188/273 (69%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 66271 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66330 |||| || ||||| |||||| | | ||| | | |||||||||||| | ||||| ||| Sbjct 31138 GCCTTTATTGACGCGGAGCACGCGATTGACGCCCACTACGCCAAGGCGTTGGGTGTCGAC 31079 Query 66331 CTCGACAACCTCGTGGTGGTT--CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTG 66388 | | | ||| | || | ||||| ||| |||| || | || |||||||||| || Sbjct 31078 ATTG--ATGCTCTTTATGTCTCGCAGCCCGACTCTGGAGAAGAAGCGCTGGAGATCGCTG 31021 Query 66389 ACCTCCTCGTCAAGTCTGGCGAGCTGTC--CATCGTCGTCGTTGACTCTGTGGCGGCCCT 66446 || || ||| ||| | |||| ||| | | ||||| | ||| ||| || ||||| Sbjct 31020 ACACACTGATCAGGTC--GGGAGCAGTCGACCTTGTCGTGCTAGACAGTGTAGCTGCCCT 30963 Query 66447 GGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCG 66506 ||||| || || ||||| ||||| || || || ||| || | | ||||| || || Sbjct 30962 CGTGCCCCGAGCAGAGCTGGAAGGGGAAATGGGAGACCAGCAAATTGCTCTGCAGGCACG 30903 Query 66507 CCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 66539 ||| ||| || || |||||||||| || || Sbjct 30902 CCTAATGAGTCAAGCTCTGCGCAAGCTGACTGG 30870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243742020745414