Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_022976.1 Length=75894 Score E Sequences producing significant alignments: (Bits) Value seq1434 188 3e-43 seq317 104 1e-17 >seq1434 Length=11778 Score = 188 bits (208), Expect = 3e-43 Identities = 358/524 (68%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 66322 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66381 ||||| |||||||||||||| ||||||||||| | || | || || |||||| Sbjct 11005 CAGCCTGACACTGGCGAGCAAGCCCTGGAGATTGCCGATATGCTGGTGCGCTCTGGCTCC 11064 Query 66382 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 66441 || ||||| || |||||||| || || ||| || || || ||||| |||||||| Sbjct 11065 GTGGATATCGTGGTGGTTGACTCCGTTGCCGCCTTGACTCCACGTGCCGAAATCGAAGGC 11124 Query 66442 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 66501 || || || || || ||| | || |||| ||||| | ||||| || ||| ||||||| Sbjct 11125 GAAATGGGTGATAGCCACATGGGTTTGCAAGCGCGGTTGATGTCACAAGCCCTGCGCAAA 11184 Query 66502 CTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 66561 || || || | |||| | ||||| || ||| | ||| | |||||| | || | Sbjct 11185 CTTACGGGTAACATCAAGCGTACCAATACCCTGGTGATCTTCATTAACCAGATCCGTATG 11244 Query 66562 AAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGG 66621 || |||||| | || | |||| ||| |||||||| ||||| || || ||| | Sbjct 11245 AAAATCGGCGTCATG---TTCGGCAATCCTGAAACCACCACAGGCGGTAACGCACTGAAG 11301 Query 66622 TTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAG 66681 || ||| |||| || ||| ||||| |||| |||| | | || || |||| |||||| Sbjct 11302 TTTTACTCCTCTGTACGCTTGGATATCCGCCGCACGGGCGCCATCAAAAAAGGTGATGAG 11361 Query 66682 GCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGC 66741 | | ||| ||| || |||||| |||| |||||| |||| || || | Sbjct 11362 GTGATTGGCTCTGAAACCAAAGTCAAAGTCATCAAAAACAAGGTGGCGCCACCCTTCAAA 11421 Query 66742 AACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTG-AGGTCGAACTCCTCGA 66800 | || |||||| | | ||||||| ||||||||||||||| |||| || | |||| Sbjct 11422 CAGGCTGAGTTCGACATAATGTACGGTGAGGGCATCTCGCGTTTAGGT-GAGGTGATCGA 11480 Query 66801 CCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT 66844 |||| | | ||||| |||||||||||||||||| Sbjct 11481 ACTGGGCACCAACCTTAAACTGGTAGAGAAGTCGGGCGCCTGGT 11524 >seq317 Length=46315 Score = 104 bits (114), Expect = 1e-17 Identities = 189/273 (69%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 66241 GCCTACATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGAC 66300 |||| || ||||| |||||| | | ||| || | |||||||||||| | ||||| ||| Sbjct 31138 GCCTTTATTGACGCGGAGCACGCGATTGACGCCCACTACGCCAAGGCGTTGGGTGTCGAC 31079 Query 66301 CTCGACAACCTCGTGGTGGTT--CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTG 66358 | | | ||| | || | ||||| ||| |||| || | || |||||||||| || Sbjct 31078 ATTG--ATGCTCTTTATGTCTCGCAGCCCGACTCTGGAGAAGAAGCGCTGGAGATCGCTG 31021 Query 66359 ACCTCCTCGTCAAGTCTGGCGAGCTGTC--CATCGTCGTCGTTGACTCTGTGGCGGCCCT 66416 || || ||| ||| | |||| ||| | | ||||| | ||| ||| || ||||| Sbjct 31020 ACACACTGATCAGGTC--GGGAGCAGTCGACCTTGTCGTGCTAGACAGTGTAGCTGCCCT 30963 Query 66417 GGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCG 66476 ||||| || || ||||| ||||| || || || ||| || | | ||||| || || Sbjct 30962 CGTGCCCCGAGCAGAGCTGGAAGGGGAAATGGGAGACCAGCAAATTGCTCTGCAGGCACG 30903 Query 66477 CCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 66509 ||| ||| || || |||||||||| || || Sbjct 30902 CCTAATGAGTCAAGCTCTGCGCAAGCTGACTGG 30870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242708537683365