Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_023009.1 Length=127188 Score E Sequences producing significant alignments: (Bits) Value seq6517 149 5e-31 >seq6517 Length=1260 Score = 149 bits (164), Expect = 5e-31 Identities = 412/623 (66%), Gaps = 23/623 (4%) Strand=Plus/Minus Query 119237 AGTTTTAAAGGTAGTGATACAGTACCTGTAGTGGATTTCTTAGAATCATATTACAATGCA 119296 || |||| ||||| |||||| | || | |||| | || | ||||||||||| Sbjct 801 AGCTTTACAGGTACAGATACAATTCCGACTATCAATTTTCTGGAGACCTATTACAATGCT 742 Query 119297 GACGTAGAGAAGGAAATGGTTGTTGCTTCTATCCCTGCTACTGAGCACTCAGTAATGTGT 119356 || ||| | || | || | || ||| | | || || |||||||| || ||||| Sbjct 741 GATTCAGACACCGAGCTTGTGGGTGGCTCTGTGGCAGCAACCGAGCACTCTGTGATGTGC 682 Query 119357 GCAAATGGTAATTATGAAACCATGGATGAGTATGAAACATATAAACGTATGTTAACAGAA 119416 | |||| |||| || || | |||||| | ||||| || | |||||| Sbjct 681 ---ATGGGTACAAATGA------GGGCGAATTTGAAACTTTCAAACGCCTGATTACAGAA 631 Query 119417 ATATATCCAACAGGCATTTTCTCTATTGTGTCTGATACTTGGGACTTTTGG--GGTAATA 119474 | ||||| | ||| ||| | |||||||||||||| ||||||||||| ||| ||| || Sbjct 630 GTGTATCCGAAAGGTATTGTTTCTATTGTGTCTGACACTTGGGACTTATGGAAAGTATTA 571 Query 119475 TGACTAAAACTTTACCTAGATTAAAGGATATTATTATGGAACGTAATGGTAAAGTAGTAA 119534 || || |||||| ||||| || || || | | || || |||||||| | Sbjct 570 --ACCGAATACTTACCTGCCTTAAAAAATGAAATAGTGAATAGAAACGGCAAAGTAGTGA 513 Query 119535 TCAGACCTGATAGTGGAGACCCTGTTAAAATTATTTGCGGAGACCCTGATGCAGA---CA 119591 | |||| ||| || |||||||| | ||||| || || | ||||| | | | || Sbjct 512 TTCGACCGGATTCGGGCGACCCTGTGGATATTATCTGTGGCAATCCTGACGGAAAAACCA 453 Query 119592 CTGAATATGAACGTAAAGGTGCAGTAGAAGTGCTTTGGGATACATTTGGAGGTACTGAAA 119651 | ||| ||| ||||| | | || || | |||||||| || || |||| | Sbjct 452 CCGAA---GAAAAAAAAGGGGTTATTGAGTTGTTATGGGATACCTTCGGTGGTATCACCA 396 Query 119652 CTGAAAAAGGGTACAAAGTATTA-GATGAACATGTAGGATTAATTTATGGAGACTCTATT 119710 || |||||| || |||| |||| | ||| |||| |||||||| || || Sbjct 395 ATGCAAAAGGCTATAAAGAATTACTACCCACA-ATAGGGGCCATTTATGGCGATAGCATC 337 Query 119711 AACTAT-GAACGTGCTCAACAAATTTGTGAAGGATTAAAAGAAAAAGGTTTTGCAAGTAT 119769 || ||| | | | ||| |||||| |||||| ||||||| ||||||| ||||| || Sbjct 336 AA-TATAGCAAGAGCTACACAAATCTGTGAACGATTAAAGCAAAAAGGCTTTGCCTCTAC 278 Query 119770 TAATGTTGTATTAGGTGTAGGTAGTTTCTCTTACCAATTTAATACTCGTGATACCCACGG 119829 |||||||| |||| || || | |||| |||| ||||| ||||||||| ||| Sbjct 277 CAATGTTGTGCTAGGCGTTGGCTCATATACTTATCAATACAATACCCGTGATACCTTCGG 218 Query 119830 GTTTGCAATCAAAGCACCGTATG 119852 ||||| || ||||| | |||| Sbjct 217 CTTTGCCATGAAAGCCACTTATG 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406830767357487