Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_023557.1
Length=271084
Score E
Sequences producing significant alignments: (Bits) Value
seq3915 596 3e-165
>seq3915
Length=2367
Score = 596 bits (660), Expect = 3e-165
Identities = 797/1102 (72%), Gaps = 16/1102 (1%)
Strand=Plus/Minus
Query 71257 ACACACATGCAGTACAGTACCTTTAATACCACTAAAAACGATCAGATGGCTGAACCGATG 71316
||||| ||| ||||| | ||||| || || | ||||| || | ||||| |||
Sbjct 1095 ACACAGATGGCCTACAGCATCTTTACTAAAACCGACAACGACCAACTCAAAGAACCCATG 1036
Query 71317 TTCCTGGGTCAGTCGGTTAACGTCTCACGTTATGATCAGCAGAAGTACCCCGCGTTCGAA 71376
||| | || ||| | || || || | || ||||| || ||||| || || | ||||||
Sbjct 1035 TTCTTCGGCCAGCCCGTCAATGTGGCGCGGTATGACCAACAGAAATATCCGGTGTTCGAG 976
Query 71377 AAGCTGATTGAGAAACAACTTTCATTCTTCTGGCGACCTGAAGAGGTGGATGTTTCGCAA 71436
|||||||| ||||||||||| || ||||||||||| || ||||| || ||||| ||||||
Sbjct 975 AAGCTGATCGAGAAACAACTCTCCTTCTTCTGGCGTCCAGAAGAAGTCGATGTGTCGCAA 916
Query 71437 GACCGTATCGACTTCCAGGGGTTGCCAGATCATGAAAAACACATCTTCGTTTCTAACCTG 71496
||||| |||| || || |||| || |||||||| || || ||| | ||||||
Sbjct 915 GACCGCGCTGACTATCAAGGCCTGCCCGAGCATGAAAAGCATATTTTCATCAGCAACCTG 856
Query 71497 AAATACCAAACCCTGCTGGACTCGATTCAGGGTCGTAGCCCGAACGTGGCCTTGCTGCCG 71556
|| || || || |||||||| || || ||||| |||||||| |||||||||||| |||||
Sbjct 855 AAGTATCAGACGCTGCTGGATTCCATCCAGGGCCGTAGCCCTAACGTGGCCTTGTTGCCG 796
Query 71557 ATCTGTTCTATCCCGGAACTCGAAACCTGGATTGAAACCTGGGCGTTCTCTGAAACGATT 71616
| || | || || || ||||||||||| || ||||||||||| || || || ||
Sbjct 795 CTGGTGTCATTGCCCGAGCTGGAAACCTGGATCGAGACCTGGGCGTTTTCCGAGACCATA 736
Query 71617 CACTCGCGCTCATACACCCACATCATCCGTAATATCTTTACTGACCCCTCCATCGTGTTT 71676
||||||||||||||||||||||||||||| |||||| | | |||||| || || |||||
Sbjct 735 CACTCGCGCTCATACACCCACATCATCCGCAATATCGTCAATGACCCTTCTGTCATGTTT 676
Query 71677 GATGACATCGTGACCAACGAACACATCAAAGCGCGTGCTGAGTCCG---TCACGGAGTAT 71733
|||||||||||| ||| ||| |||||| |||||||| | | | || | | |||
Sbjct 675 GATGACATCGTGCGCAATGAAAACATCACCGCGCGTGC---GACAGATATCGCCCATTAT 619
Query 71734 TACGACCAGCTGATCGAAATGACCATGTACCTCAACT---TACTGGGTGAAGGTACTCAT 71790
||||| |||||||| | |||||||| | | | ||||||||| || | ||||
Sbjct 618 TACGATGAGCTGATCCAGCAGACCATGT---TGTATTCGCAACTGGGTGAGGGCAATCAT 562
Query 71791 GTAATCAATGGTAAGAAAGTCGTGGTCTCGATGCGTGCTATCAAGCGTCTGGTCTACCTG 71850
|| |||||||| ||| |||||| | |||||| | || ||| ||||||
Sbjct 561 GTCATCAATGGCGAGACCAAAGTGGTCAACAAGCGTGCGCTGAAAAAGCTGCTCTACCGC 502
Query 71851 TGCATCGTGTCGGTCAACGTGTTGGAAGCCATCCGCTTCTATGTCTCGTTTGCCTGCTCG 71910
||| | || ||||| | | |||||||||||||| || ||| ||||||||||||
Sbjct 501 TGCCTGATGAACGTCAATATCCTCGAAGCCATCCGCTTTTACGTCAGCTTTGCCTGCTCG 442
Query 71911 TTTGCCTTTGCTGAACGCGAGCTGATGGAAGGCAACGCCAAGATCATTAAACTGATCGCC 71970
|| || ||||| || ||| || ||||||||||||| ||||||||||| || || ||
Sbjct 441 TTCGCGTTTGCCGAGCGCAAGGTGATGGAAGGCAATGCCAAGATCATCCGCCTCATTGCG 382
Query 71971 CGTGATGAAGCCCTGCATCTGACCGGCACCCAGCACATGATCATGTTAATGAAGTCCGGT 72030
||||| ||||||||||| || |||||||||||||||||| | | | ||| |||||
Sbjct 381 CGTGACGAAGCCCTGCACCTCACCGGCACCCAGCACATGCTGAATATCATGCGCTCCGGC 322
Query 72031 GCTGACGATGCTGAGATGGCGGAAATCGTTAAAGAGTGTGAAGCAGAAACATACGCACTC 72090
|||||||| ||| | || || |||| ||| | | || | | |
Sbjct 321 CAGGACGATGCCGAGTTCGCCGAGATCGCCGCTGAGCTGCACACTGAGTGCTTTGAGATG 262
Query 72091 TTTAAGGACGCTGCAGAGCAGGAGAAAGACTGGGCGAACTATCTATTCCAGGACGGGTCG 72150
|| || ||| || |||||||||||| | ||||| | || || || | || || ||
Sbjct 261 TTCAAAAGCGCCGCCGAGCAGGAGAAAAAATGGGCAGAATACCTGTTTAAAGATGGCTCC 202
Query 72151 ATGATCGGTCTGAACAAAGAGATCGTGTGCCAGTACATCGAATACATCACCAACATCCGT 72210
||||| || ||||||| || ||| ||||||||||| | |||||||||||||||| ||||
Sbjct 201 ATGATAGGCTTGAACAAGGATATCCTGTGCCAGTACGTGGAATACATCACCAACACCCGT 142
Query 72211 ATTCGCGCCATCGG-TTACGA-TGACATCTACGCCGGTGTCAAAGCTAACCCAATCCCAT 72268
|| | | |||| || | | | || | | || || |||| ||||| || ||||
Sbjct 141 ATGGCCTCGGTCGGCTTGCCACCGGCA--TTCCCCAATGCCAAAAACAACCCGATTCCAT 84
Query 72269 GGATCAACTCCTGGTTGGTTTCTGACAACGTGCAAGTCGCTCCACAGGAAGTGGAAGTAA 72328
|||||||| ||||| ||| || || | ||| ||||| || || || || || ||| | |
Sbjct 83 GGATCAACACCTGGCTGGCCTCCGATACCGTACAAGTGGCGCCGCAAGAGGTCGAACTCA 24
Query 72329 GTTCTTATCTGGTCGGTCAGAT 72350
| ||||| ||| | ||||||||
Sbjct 23 GCTCTTACCTGATTGGTCAGAT 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 867240155941920
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