Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq3915 596 3e-165 >seq3915 Length=2367 Score = 596 bits (660), Expect = 3e-165 Identities = 797/1102 (72%), Gaps = 16/1102 (1%) Strand=Plus/Minus Query 71257 ACACACATGCAGTACAGTACCTTTAATACCACTAAAAACGATCAGATGGCTGAACCGATG 71316 ||||| ||| ||||| | ||||| || || | ||||| || | ||||| ||| Sbjct 1095 ACACAGATGGCCTACAGCATCTTTACTAAAACCGACAACGACCAACTCAAAGAACCCATG 1036 Query 71317 TTCCTGGGTCAGTCGGTTAACGTCTCACGTTATGATCAGCAGAAGTACCCCGCGTTCGAA 71376 ||| | || ||| | || || || | || ||||| || ||||| || || | |||||| Sbjct 1035 TTCTTCGGCCAGCCCGTCAATGTGGCGCGGTATGACCAACAGAAATATCCGGTGTTCGAG 976 Query 71377 AAGCTGATTGAGAAACAACTTTCATTCTTCTGGCGACCTGAAGAGGTGGATGTTTCGCAA 71436 |||||||| ||||||||||| || ||||||||||| || ||||| || ||||| |||||| Sbjct 975 AAGCTGATCGAGAAACAACTCTCCTTCTTCTGGCGTCCAGAAGAAGTCGATGTGTCGCAA 916 Query 71437 GACCGTATCGACTTCCAGGGGTTGCCAGATCATGAAAAACACATCTTCGTTTCTAACCTG 71496 ||||| |||| || || |||| || |||||||| || || ||| | |||||| Sbjct 915 GACCGCGCTGACTATCAAGGCCTGCCCGAGCATGAAAAGCATATTTTCATCAGCAACCTG 856 Query 71497 AAATACCAAACCCTGCTGGACTCGATTCAGGGTCGTAGCCCGAACGTGGCCTTGCTGCCG 71556 || || || || |||||||| || || ||||| |||||||| |||||||||||| ||||| Sbjct 855 AAGTATCAGACGCTGCTGGATTCCATCCAGGGCCGTAGCCCTAACGTGGCCTTGTTGCCG 796 Query 71557 ATCTGTTCTATCCCGGAACTCGAAACCTGGATTGAAACCTGGGCGTTCTCTGAAACGATT 71616 | || | || || || ||||||||||| || ||||||||||| || || || || Sbjct 795 CTGGTGTCATTGCCCGAGCTGGAAACCTGGATCGAGACCTGGGCGTTTTCCGAGACCATA 736 Query 71617 CACTCGCGCTCATACACCCACATCATCCGTAATATCTTTACTGACCCCTCCATCGTGTTT 71676 ||||||||||||||||||||||||||||| |||||| | | |||||| || || ||||| Sbjct 735 CACTCGCGCTCATACACCCACATCATCCGCAATATCGTCAATGACCCTTCTGTCATGTTT 676 Query 71677 GATGACATCGTGACCAACGAACACATCAAAGCGCGTGCTGAGTCCG---TCACGGAGTAT 71733 |||||||||||| ||| ||| |||||| |||||||| | | | || | | ||| Sbjct 675 GATGACATCGTGCGCAATGAAAACATCACCGCGCGTGC---GACAGATATCGCCCATTAT 619 Query 71734 TACGACCAGCTGATCGAAATGACCATGTACCTCAACT---TACTGGGTGAAGGTACTCAT 71790 ||||| |||||||| | |||||||| | | | ||||||||| || | |||| Sbjct 618 TACGATGAGCTGATCCAGCAGACCATGT---TGTATTCGCAACTGGGTGAGGGCAATCAT 562 Query 71791 GTAATCAATGGTAAGAAAGTCGTGGTCTCGATGCGTGCTATCAAGCGTCTGGTCTACCTG 71850 || |||||||| ||| |||||| | |||||| | || ||| |||||| Sbjct 561 GTCATCAATGGCGAGACCAAAGTGGTCAACAAGCGTGCGCTGAAAAAGCTGCTCTACCGC 502 Query 71851 TGCATCGTGTCGGTCAACGTGTTGGAAGCCATCCGCTTCTATGTCTCGTTTGCCTGCTCG 71910 ||| | || ||||| | | |||||||||||||| || ||| |||||||||||| Sbjct 501 TGCCTGATGAACGTCAATATCCTCGAAGCCATCCGCTTTTACGTCAGCTTTGCCTGCTCG 442 Query 71911 TTTGCCTTTGCTGAACGCGAGCTGATGGAAGGCAACGCCAAGATCATTAAACTGATCGCC 71970 || || ||||| || ||| || ||||||||||||| ||||||||||| || || || Sbjct 441 TTCGCGTTTGCCGAGCGCAAGGTGATGGAAGGCAATGCCAAGATCATCCGCCTCATTGCG 382 Query 71971 CGTGATGAAGCCCTGCATCTGACCGGCACCCAGCACATGATCATGTTAATGAAGTCCGGT 72030 ||||| ||||||||||| || |||||||||||||||||| | | | ||| ||||| Sbjct 381 CGTGACGAAGCCCTGCACCTCACCGGCACCCAGCACATGCTGAATATCATGCGCTCCGGC 322 Query 72031 GCTGACGATGCTGAGATGGCGGAAATCGTTAAAGAGTGTGAAGCAGAAACATACGCACTC 72090 |||||||| ||| | || || |||| ||| | | || | | | Sbjct 321 CAGGACGATGCCGAGTTCGCCGAGATCGCCGCTGAGCTGCACACTGAGTGCTTTGAGATG 262 Query 72091 TTTAAGGACGCTGCAGAGCAGGAGAAAGACTGGGCGAACTATCTATTCCAGGACGGGTCG 72150 || || ||| || |||||||||||| | ||||| | || || || | || || || Sbjct 261 TTCAAAAGCGCCGCCGAGCAGGAGAAAAAATGGGCAGAATACCTGTTTAAAGATGGCTCC 202 Query 72151 ATGATCGGTCTGAACAAAGAGATCGTGTGCCAGTACATCGAATACATCACCAACATCCGT 72210 ||||| || ||||||| || ||| ||||||||||| | |||||||||||||||| |||| Sbjct 201 ATGATAGGCTTGAACAAGGATATCCTGTGCCAGTACGTGGAATACATCACCAACACCCGT 142 Query 72211 ATTCGCGCCATCGG-TTACGA-TGACATCTACGCCGGTGTCAAAGCTAACCCAATCCCAT 72268 || | | |||| || | | | || | | || || |||| ||||| || |||| Sbjct 141 ATGGCCTCGGTCGGCTTGCCACCGGCA--TTCCCCAATGCCAAAAACAACCCGATTCCAT 84 Query 72269 GGATCAACTCCTGGTTGGTTTCTGACAACGTGCAAGTCGCTCCACAGGAAGTGGAAGTAA 72328 |||||||| ||||| ||| || || | ||| ||||| || || || || || ||| | | Sbjct 83 GGATCAACACCTGGCTGGCCTCCGATACCGTACAAGTGGCGCCGCAAGAGGTCGAACTCA 24 Query 72329 GTTCTTATCTGGTCGGTCAGAT 72350 | ||||| ||| | |||||||| Sbjct 23 GCTCTTACCTGATTGGTCAGAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 867240155941920