Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq2003 156 5e-33 seq2498 93.3 5e-14 >seq2003 Length=7520 Score = 156 bits (172), Expect = 5e-33 Identities = 332/495 (67%), Gaps = 8/495 (2%) Strand=Plus/Minus Query 145889 GGAGAGAACAGAGTGATGTAATCGTCTTTAATCAGACGTTCAAACATCAGGTCGTTGATT 145948 || || ||||||||||||| | | | || ||||| || | |||||||| |||||| Sbjct 7137 GGTGAAAACAGAGTGATGTTCTGGCCCTTGATCAGGCGCTGGTACATCAGGCGGTTGATC 7078 Query 145949 TGAACACCGTAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTGAGT 146008 || || || ||||| | ||||| | |||||||| |||||||| |||||| || || Sbjct 7077 TGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTTTTCAGC 7018 Query 146009 ACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAATGTCGCCGCGCCACCG 146068 || || || ||| ||||| | |||||| | || ||| |||| |||||||| ||||| Sbjct 7017 ACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCCCCACCC 6958 Query 146069 CGAACTCCACCTTGGGAGCAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAAGGAATA 146128 || || || || || ||||| || || || || | |||| |||| |||| || | Sbjct 6957 CGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAGTTTGTAGAACGGCAGG 6898 Query 146129 ACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCTGCACGAATCATACCT 146188 || ||||| | |||| ||| | || | || || || || || Sbjct 6897 CAACCGGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCCCAGCGCGCGGATGCGGCCC 6838 Query 146189 GCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGATTCAGCAGATTTG 146248 ||||| | ||| || || || |||| |||| |||| || ||| || | | Sbjct 6837 GCGTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCAC----GATCGCGCTGGTGGT 6782 Query 146249 TTAATTGAT----TTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAATTGACG 146304 | |||||| | ||| ||| || || || | ||||| || ||||| || || Sbjct 6781 TGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAACTGGCG 6722 Query 146305 AGTAGGAGTACGAGCACCTGCCATAATAGGAGTAGGCAGAGAAATTTTCTTAGTTGACAC 146364 ||||||||||| |||| ||||| ||||| |||||||| || || || || ||||| Sbjct 6721 CGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGATCTTGAAGGTAGACAC 6662 Query 146365 AGCATCGTAAAAACG 146379 ||||||||||| || Sbjct 6661 CGCATCGTAAAAGCG 6647 >seq2498 Length=5458 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 ||||||||| || |||| |||||| | ||||| || |||||||| || |||||||||||| Sbjct 4885 TGGTGCCGGGTATCGGAATCGAACTGATGACCTTCGCATTACAAGTGCGCTGCTCTACCA 4826 Query 72164 ACTGAGCTAAACCGGC 72179 |||||||||| ||||| Sbjct 4825 ACTGAGCTAACCCGGC 4810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554290874008480