Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_023575.1
Length=45550
Score E
Sequences producing significant alignments: (Bits) Value
seq2305 87.8 5e-13
>seq2305
Length=6233
Score = 87.8 bits (96), Expect = 5e-13
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 21028 AATCGTGGTTATCAGAAATCCACTTATTACAAAGAAAACATCAACTCCAACAAATCCTCC 21087
||||| ||| |||||| | ||||| || ||||| |||||||| || || | || || ||
Sbjct 5256 AATCGAGGTGATCAGATAACCACTGATCACAAAAAAAACATCTACGCCTAAGAAGCCGCC 5315
Query 21088 AGAGAATGACTTAAATCCGGCATGAAAAAGAATGACCGACAAAACTGCAATAGCGCGGAG 21147
||||| | || || || || ||| ||||||| || | ||||| || | ||||||||
Sbjct 5316 AGAGATTCGCTCAATACCTGCGTGATAAAGAATCACTGGTAAAACAGCCAGTGCGCGGAG 5375
Query 21148 TCCGTCTATCTCT 21160
||| || || |||
Sbjct 5376 TCCATCGATTTCT 5388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145622345459952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |