Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1470 197 1e-44 seq311 96.9 3e-14 >seq1470 Length=11388 Score = 197 bits (218), Expect = 1e-44 Identities = 934/1462 (64%), Gaps = 35/1462 (2%) Strand=Plus/Plus Query 281377 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 281436 || ||| ||||| || || || || ||| || || || || |||| | ||| || Sbjct 8680 ATCATTTGTAATCGTGATCTTGTTCTCTTTCCCCGTCGACTTCTCGACGGCTGACACGTT 8739 Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496 ||||| ||||| |||||| ||||||||||| ||||| ||||| || || | | | Sbjct 8740 TAGAATGCCATTCACATCCACGTCAAATGTGACGTCAATCTGAGGCACACCACGCGGCAT 8799 Query 281497 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 281556 ||| || || || ||||| |||| | || ||| || ||||| || | || Sbjct 8800 AGGCGGAATGCCGTCCAAGCTAAACTTGCCTAGAAGATGGTTATCGCGTGTCATCGCCCG 8859 Query 281557 TTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAAT- 281614 ||||| || || | ||||| |||| | ||| |||||||| | ||| || | ||| Sbjct 8860 CTCACCTTCAAACACCTGGATCAGTA-CACCAGGCTGATTATCGGCATACGTCGAGAATG 8918 Query 281615 ACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCA 281674 ||| | || ||| || ||| || ||||| | ||| | |||||||| | || Sbjct 8919 ACTGCGACTTCTTTGCAGGGACC-GTAGTGTTGCGTGGAATGAGCTTGGTCATGACTCCG 8977 Query 281675 CCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 281734 || || || || || ||||| || | ||| | ||||| | || | || || || || Sbjct 8978 CCTGCCGTCTCCAATCCAAGCGACAAAGGTGCTACATCCAACAGCAGAAGATCCTGCAGC 9037 Query 281735 TTTTCATCAGTTTGACCAACA---AGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 281791 || | | ||| || ||||| || ||||| | | || ||||| || ||| Sbjct 9038 TTGGAAGAGGCCCCACCGCCACTCAGAATTGCAGCTTGGACGGTCGCTCCATACGCCACA 9097 Query 281792 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 281851 ||||| || ||||||| | | | || || || || || || |||| || | Sbjct 9098 GCTTCGTCCGGATTAATCGACTTAAATAATTCCTTTCCGTTAAAGAAATCGATCAGCAAC 9157 Query 281852 TGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 281911 ||| ||||| || || |||| || || || || | || || |||||||| | | Sbjct 9158 TGTTGCACCTTTGGGATGCGAGTGGAGCCACCGACCAGGACGATCTCATGCACTTCGCCT 9217 Query 281912 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA--GACCAGCTCTAAACA 281969 || ||| || || || ||||||| | || || || | | | || ||| | Sbjct 9218 TTCGACAGCTTCGAGTCGCGCAAAACTTGGGCGACTGGCTCCATTGTCTTGCG--AAAGA 9275 Query 281970 AGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTT 282029 | || | || || || || ||| | |||| |||| || || |||| || || | Sbjct 9276 AATCGGCGCATAGATCCTCAAATCTCGCTCGCGTAATGGTCGTGTTGAAATCGATGCCGT 9335 Query 282030 CGAACAAAGAATCAACTTCAATCGTA-GTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 282088 | | | ||||||| ||||| ||| | ||| | |||| || | | || || | Sbjct 9336 CAAGAAGCGAATCAATCTCAAT-GTACGCTTGCGCAGAAGTGGACAAGGTCCGCTTGGAT 9394 Query 282089 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTT 282146 || || ||||| || | |||| || | ||| | || || | ||| |||| | Sbjct 9395 CGCTCGCATGCCGTACGCAGTCGACGCAGGGCACGT--TGGTTCAACGTCATATCTTTGC 9452 Query 282147 TATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTC 282204 || || | |||||| || ||| | ||| | ||||| || || ||||| ||||| Sbjct 9453 GATGCTTACGCTTGAACTCGGAGACAAA--ATGATCCACAAGGCGGTTGTCAAAGTCTTC 9510 Query 282205 ACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGA 282264 ||| ||||| | || | || | || ||| | || | || | || || |||| Sbjct 9511 ACCGCCCAAATGCGTGTCACCGGCAGTGGCTTTCACCTCAAAGATGCCGTCCTCAATGCT 9570 Query 282265 CAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTT 282324 ||| || | || ||| || || || |||| ||| || || || ||||| ||| Sbjct 9571 CAACAGCGACACGTCAAACGTGCCGCCGCCCAGATCGAAGATTAGCACATTGTGTTCGCC 9630 Query 282325 GTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCT 282384 | | | | || || || || || || | || ||||| ||||| || || ||||| | Sbjct 9631 GCCCT---TCTTGTCCAGGCCGTAGGCGATCGCGGCAGCCGTTGGCTCGTTGATAATACG 9687 Query 282385 CAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTT 282444 || || || | ||||||||| ||| |||||||| || || || | ||| || ||||| Sbjct 9688 CAGCACGTTCAAACCAGCAATGGCTCCAGCATCTTTGGTCGCCTGACGTTGCGAGTCGTT 9747 Query 282445 AAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGC 282504 || |||||||| || || | || |||| | |||| || ||||||||||| || Sbjct 9748 GAAGTATGCAGGGACCGTCACCACTGCATTCCTCACTTGCTTGCCAATATAAGCTTCCGC 9807 Query 282505 TGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--AGAATATTGCTTG 282562 | | ||| || | | | ||| || || || | || || ||| || ||| Sbjct 9808 AATCTCACGCATCTTGATCAGCACCATGGACGAGATCTCCTCAGGCTGGAACCTT--TTG 9865 Query 282563 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC---AACATTAATAACTTTA 282619 | ||| || | | ||||| | | ||||| | | | | | | || || Sbjct 9866 GTCTCACCTTTAAACTGCACTTCCACCTGAGGTTTGTCCGCCGAATCTCGAGTCACCTTG 9925 Query 282620 AATGGCCAATATTTCATATCTGATTGAACACTT-TGG-TCATTAAAATCTCTACCAATTA 282677 || ||||||| ||| || || || || ||||| ||| ||| ||| | | || || | Sbjct 9926 AACGGCCAATGTTTAATGTCCGACTG--CACTTCTGGATCAGAAAACTTGCGTCCGATCA 9983 Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737 | || || ||||| || | || ||| || || | ||| |||| | || ||||||| Sbjct 9984 AACGCTTGGCATCGAACACCGTGTTGTGTGCGTTCATAGCAACTTGGTTCTTCGCTGCAT 10043 Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797 | ||||||||| | |||| ||| ||||| | ||||| ||||| || ||||| || |||| Sbjct 10044 CACCAATCAGACGCTCTGACTCCGTAAACGCCACATACGATGGCGTCGTGCGGTTTCCTT 10103 Query 282798 GATCATTCGCAATAATTTCAAC 282819 | || ||||||||||| || || Sbjct 10104 GGTCGTTCGCAATAATCTCCAC 10125 >seq311 Length=43657 Score = 96.9 bits (106), Expect = 3e-14 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 432282 TTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCT 432341 ||| | ||||||||||| ||||| | || ||||||||||| |||||||| || | || Sbjct 20501 TTGCGCGGTAAAGAAGGACGTATCCGCGGTAATTTGATGGGCAAGCGTGTAGACTTTTCG 20560 Query 432342 GCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTC 432399 |||||||| |||||||| |||| || |||||||| | | |||| || ||||||| Sbjct 20561 GCACGTACGGTTATTACCGCTGACCCGAATATTGCAATTGACCAAGTGGGCGTTCCTC 20618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740174643929958