Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq2003 131 2e-25 >seq2003 Length=7520 Score = 131 bits (144), Expect = 2e-25 Identities = 254/370 (69%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 32848 CGATTTTCTTCCACACCCTTGTTGTTCTTGAGCACAAGGATTTTTTCAACTTCAAGATGC 32907 || |||||||| || || |||||| || ||||| || | | ||| |||||||| ||| Sbjct 7050 CGGTTTTCTTCTACGCCGCGGTTGTTTTTCAGCACCAGCAGTGATTCGACTTCAAGGTGC 6991 Query 32908 CACATCGGATAATACAGAGTAGCAGCGCCACCACGTACACCGCCCTGTGAGCAGCTTTTT 32967 |||| ||| || ||| || || || ||||| || ||||||||||| |||||| ||| Sbjct 6990 CACAACGGGTAGAACAACGTCGCCGCCCCACCCCGCACACCGCCCTGCGAGCAGGATTTC 6931 Query 32968 ACCGCAGTCTGAAAGTATTTCCAGAATGGGATAATACCAGTATGACGAACCTCGCCAGAA 33027 ||||||| ||| || ||| |||| || | ||| ||||| | | ||||| | Sbjct 6930 ACCGCAGACTGGAACAGTTTGTAGAACGGCAGGCAACCGGTATGTTGCGCTTCGCCGCCA 6871 Query 33028 CGAATTCTAG-AGCCTTCAGCACGAATAGCACCACCATTGATACCGATACCAGCTCTCTT 33086 || | ||| | ||| || || || || | |||| || || || || | || Sbjct 6870 CGTA-TCTCGCTGCCCAGCGCGCGGATGCGGCCCGCGTTGACGCCTATGCCGGCGC-GTT 6813 Query 33087 GC-TGATATAGTCAACGATAGAACTAGCGGTTGCGTTAATGCTATCGAGTTCATCACCAC 33145 || || ||| | ||||| | || | |||||| || ||||| || || ||| ||| Sbjct 6812 GCGAGACATACTTCACGATCGCGCTGGTGGTTGCATTGATGCTGTCCAGGCTGTCATCAC 6753 Query 33146 TTTCAATCTTGACGCATGAGCTAAACTGACGGGTCGGAGTACGAACACCAGCCAGAATAG 33205 || ||| ||||| ||||| ||||| || || |||||||| ||||| |||| |||| Sbjct 6752 ACTCGATCAGTACGCAGGAGCTGAACTGGCGCGTAGGAGTACGCACACCGGCCATGATAG 6693 Query 33206 GAGTCGGAAG 33215 | || || || Sbjct 6692 GCGTAGGCAG 6683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710208779584880