Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq5576 102 8e-17 >seq5576 Length=1464 Score = 102 bits (112), Expect = 8e-17 Identities = 399/621 (64%), Gaps = 30/621 (5%) Strand=Plus/Minus Query 26176 ATTTATATCCGTAATCTCTAACTCCCCTCTAGCAGAAGGTTTAA-CGCTCTTAGCTTTCT 26234 ||||| ||| ||||| || | || |||| || ||||||||| | |||| ||||| | Sbjct 876 ATTTACATCAGTAATTTCATATTCACCTCGAGGAGAAGGTTTTAGCGCT-TTAGCAATAG 818 Query 26235 GTATAACAGAATTATCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgttt 26294 || ||| ||||||||||||||| ||||| | | || ||||| || || Sbjct 817 CTACCACACTATTATCGTAAAAGTATAAGCCAGGTACAGCATAGTTAGACTTGGGCTGCA 758 Query 26295 ttggtttttCTTCAATACTCACCACTGTACCTTCAGA-----ATCAAACTCAACAACACC 26349 ||||| ||||| || | || ||| || | ||||||||| || ||||| Sbjct 757 CAGGTTTCTCTTCTATTGATA-----GTGCCTGCATATTTTCATCAAACTCTACCACACC 703 Query 26350 AAATCTTTCAGGATCATTTACGTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAAT 26409 | | | ||| |||||| ||| || || |||| | || | | || || | || | | Sbjct 702 ATAACGTTCCGGATCAGATACCTGGTAGGCAAAAACATAACCGCCCTCAATATTATT--T 645 Query 26410 ATGTTCTTTAGCAGAATCTAAAATGCTACCAAAACTCTGACCAAAGAATAAA-TTATCAC 26468 | | ||| ||| | | ||| |||| | | | | ||| || ||||||| Sbjct 644 AAGGTCTGGAGCTGTTT----------ACCTAAAC-CGGTGCCATGAAAAATGTTATCAC 596 Query 26469 CTAGCACAAGTGCTACAGAATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTG 26528 | || || || ||||| ||| | || ||||| ||||||| | ||| || | || Sbjct 595 CCAGAACCAGGGCTACTTTATCGTTTCCGATAAACGATGCACCAATTACAAATGCCTGTG 536 Query 26529 CTAAACCTTTTGGGCTATCCTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAACCAT 26588 | | || ||||| || |||| ||||| | | |||| | | |||| Sbjct 535 CCAGGCCATTTGGAACTTCTTGTACGGCATATTCAAACCTGCATCCAATATGACTTCCAT 476 Query 26589 CACCTAGAAGA--TTTACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTC 26646 | |||| |||| |||| | ||| ||| ||||||||| || ||||| |||| | || Sbjct 475 CTCCTAAAAGACGTTTAAAGGATTGATT--ATCTTCTGGAGTGGTAATAATTAAAACCTC 418 Query 26647 CCTAATTCCAGAAAGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAAT 26706 | ||||| | | | || | ||| | |||||||||||||| || ||||| || || Sbjct 417 ACGTATTCCTGCCATTAATAAGGTAGATAACGGATAATAAATCATTGGCTTATCATAGAT 358 Query 26707 TGGTAATAGTTGTTTACTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACC 26766 || | || ||| || || | |||| |||| ||||||||||| || || || || Sbjct 357 CGGCATTAATTGCTTGCTGATGGCTTTTGTAATCGGGTAAAGCCTGGTGCCGGATCCGCC 298 Query 26767 TGCTAAGATAATACCTTTCAT 26787 ||| | || || || ||||| Sbjct 297 TGCAAGAATGATTCCCTTCAT 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475375232244960