Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_023693.1
Length=148612
Score E
Sequences producing significant alignments: (Bits) Value
seq5576 102 8e-17
>seq5576
Length=1464
Score = 102 bits (112), Expect = 8e-17
Identities = 399/621 (64%), Gaps = 30/621 (5%)
Strand=Plus/Minus
Query 26176 ATTTATATCCGTAATCTCTAACTCCCCTCTAGCAGAAGGTTTAA-CGCTCTTAGCTTTCT 26234
||||| ||| ||||| || | || |||| || ||||||||| | |||| ||||| |
Sbjct 876 ATTTACATCAGTAATTTCATATTCACCTCGAGGAGAAGGTTTTAGCGCT-TTAGCAATAG 818
Query 26235 GTATAACAGAATTATCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgttt 26294
|| ||| ||||||||||||||| ||||| | | || ||||| || ||
Sbjct 817 CTACCACACTATTATCGTAAAAGTATAAGCCAGGTACAGCATAGTTAGACTTGGGCTGCA 758
Query 26295 ttggtttttCTTCAATACTCACCACTGTACCTTCAGA-----ATCAAACTCAACAACACC 26349
||||| ||||| || | || ||| || | ||||||||| || |||||
Sbjct 757 CAGGTTTCTCTTCTATTGATA-----GTGCCTGCATATTTTCATCAAACTCTACCACACC 703
Query 26350 AAATCTTTCAGGATCATTTACGTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAAT 26409
| | | ||| |||||| ||| || || |||| | || | | || || | || | |
Sbjct 702 ATAACGTTCCGGATCAGATACCTGGTAGGCAAAAACATAACCGCCCTCAATATTATT--T 645
Query 26410 ATGTTCTTTAGCAGAATCTAAAATGCTACCAAAACTCTGACCAAAGAATAAA-TTATCAC 26468
| | ||| ||| | | ||| |||| | | | | ||| || |||||||
Sbjct 644 AAGGTCTGGAGCTGTTT----------ACCTAAAC-CGGTGCCATGAAAAATGTTATCAC 596
Query 26469 CTAGCACAAGTGCTACAGAATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTG 26528
| || || || ||||| ||| | || ||||| ||||||| | ||| || | ||
Sbjct 595 CCAGAACCAGGGCTACTTTATCGTTTCCGATAAACGATGCACCAATTACAAATGCCTGTG 536
Query 26529 CTAAACCTTTTGGGCTATCCTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAACCAT 26588
| | || ||||| || |||| ||||| | | |||| | | ||||
Sbjct 535 CCAGGCCATTTGGAACTTCTTGTACGGCATATTCAAACCTGCATCCAATATGACTTCCAT 476
Query 26589 CACCTAGAAGA--TTTACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTC 26646
| |||| |||| |||| | ||| ||| ||||||||| || ||||| |||| | ||
Sbjct 475 CTCCTAAAAGACGTTTAAAGGATTGATT--ATCTTCTGGAGTGGTAATAATTAAAACCTC 418
Query 26647 CCTAATTCCAGAAAGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAAT 26706
| ||||| | | | || | ||| | |||||||||||||| || ||||| || ||
Sbjct 417 ACGTATTCCTGCCATTAATAAGGTAGATAACGGATAATAAATCATTGGCTTATCATAGAT 358
Query 26707 TGGTAATAGTTGTTTACTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACC 26766
|| | || ||| || || | |||| |||| ||||||||||| || || || ||
Sbjct 357 CGGCATTAATTGCTTGCTGATGGCTTTTGTAATCGGGTAAAGCCTGGTGCCGGATCCGCC 298
Query 26767 TGCTAAGATAATACCTTTCAT 26787
||| | || || || |||||
Sbjct 297 TGCAAGAATGATTCCCTTCAT 277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475375232244960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |