Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq3915 203 3e-47 seq2003 165 8e-36 seq466 102 8e-17 >seq3915 Length=2367 Score = 203 bits (224), Expect = 3e-47 Identities = 274/379 (72%), Gaps = 2/379 (1%) Strand=Plus/Plus Query 121982 CATGATGTCGTCAAAGACGATCGACGGGTCTGCCAGGATGTTGCGGATGATGTGGGTGTA 122041 || |||||| ||||| | || || ||||| | ||| |||||||||||||||||||| Sbjct 664 CACGATGTCATCAAACATGACAGAAGGGTCATTGACGATATTGCGGATGATGTGGGTGTA 723 Query 122042 CGAACGAGAGTGAATAGTCTCACTGAACGCCCAAGTCTCCACCCAAGTTTCCAGGGTGGT 122101 || || ||||| || ||||| |||||||| ||||| | ||| |||||||| || Sbjct 724 TGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTCTCGATCCAGGTTTCCAGCTCGGG 783 Query 122102 GTCGGATACGATCGGCAGAAGAACTGCGTTCGGGCCACGGCCCTGTACAGAGTCCAGAAG 122161 || || | ||||| | | |||| |||| ||||||||| | || ||||| || Sbjct 784 CAATGACACCAGCGGCAACAAGGCCACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAG 843 Query 122162 GATCTGATACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGAAGATTCATG-T 122220 ||||||||||||||||||||||||| || ||||| || || || || || | || | Sbjct 844 CGTCTGATACTTCAGGTTGCTGATGAAAATATGCTTTTCATGCTCGGGCAG-GCCTTGAT 902 Query 122221 AGTCAATTCGGTCACGGGTCACGTTCACCTCTTCCGGACGCCAGAAGAATGCCAGTTGCT 122280 ||||| ||||| | | ||| | || ||||| |||||||||||||| | ||||| | Sbjct 903 AGTCAGCGCGGTCTTGCGACACATCGACTTCTTCTGGACGCCAGAAGAAGGAGAGTTGTT 962 Query 122281 TTTCGATCAGCTTTTCGAACTTAGCGTGTTTTTGCTGGTCATAACGAGAAACGTTCGGCG 122340 | ||||||||||| |||||| | | ||| || |||||||| || | || || | Sbjct 963 TCTCGATCAGCTTCTCGAACACCGGATATTTCTGTTGGTCATACCGCGCCACATTGACGG 1022 Query 122341 TCTCACCGAGGAACATCGG 122359 || |||| |||||| || Sbjct 1023 GCTGGCCGAAGAACATGGG 1041 Score = 105 bits (116), Expect = 7e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 121690 TCAGCATATACTGAGTTCCTGACAAATGCAAGGCTTCATCACGAGCAATTAACTCGATGA 121749 ||||||| | ||| || || | | |||| |||||| ||||| ||||| | ||||| Sbjct 339 TCAGCATGTGCTGGGTGCCGGTGAGGTGCAGGGCTTCGTCACGCGCAATGAGGCGGATGA 398 Query 121750 TGTTGGTATTGCCCAGCATAACCCCACGCTCACCGAAAGCGAAGGAGCAGGCAAAGCTCA 121809 | |||| |||||| ||| ||| ||||| | || ||||| |||||||||||||| | Sbjct 399 TCTTGGCATTGCCTTCCATCACCTTGCGCTCGGCAAACGCGAACGAGCAGGCAAAGCTGA 458 Query 121810 CGTAGAAGCGGATAGCTTCGAGTGCGTTGATATTGTGCAGGCACAGGTACAGC 121862 |||| |||||||| |||||||| |||| || |||||| |||| ||| Sbjct 459 CGTAAAAGCGGATGGCTTCGAGGATATTGACGTTCATCAGGCAGCGGTAGAGC 511 >seq2003 Length=7520 Score = 165 bits (182), Expect = 8e-36 Identities = 818/1272 (64%), Gaps = 59/1272 (5%) Strand=Plus/Minus Query 123353 CCGAGGTTGATTGCAGACAGCGTACAAAGTGCAATCTCGCCATCGTCCTCAGGATTTTTG 123412 || ||||| | || |||| ||||| || || || ||||| ||| || ||| Sbjct 7473 CCCAGGTTAAAGGCCGACAAGGTACACAGCGCGATTTCGCCTTCGGTGTCG------TTG 7420 Query 123413 AGGTCATTGA-TCGCGTGAGTAGGCAGGGCAATCTCCATGCACAGGTTGGACTGTTTCAC 123471 | |||||| | | || || || ||||| || || ||||| |||||||||||||| ||| Sbjct 7419 ATGTCATTCAATGGCTTG-GTTGGCAGCGCGATTTCCATACACAGGTTGGACTGACGCAC 7361 Query 123472 CGGGGCCAGTTCTGGATTGAACGGGCTGTTGGTGTTGCAGTGGTCAACGTGCTGAATGTA 123531 ||| |||| | |||| |||||||||| ||||||||||||||||||| ||| ||||| Sbjct 7360 CGGCGCCACGGCAGGATCAAACGGGCTGTGCGTGTTGCAGTGGTCAACGTTCTGGATGTA 7301 Query 123532 GATGCGTCCTGT-CTGACTGCGCTCCTGCATAGCCACGGAGAAGGCTTCTGCTGCGGAGA 123590 ||| || || || | | | ||||||||||| ||| ||||| ||| | || | | Sbjct 7300 GATACGGCCGGTACCGGCA-CGCTCCTGCATGACCAGCGAGAACAAGTCTACCGCTGGAA 7242 Query 123591 TGC----TTTTCTTAGCCACTTCCGGATCGGCTTCCAACTTCTCGTACAACTCTTCAAAT 123646 ||| ||| | || | ||| || ||||| ||| ||||| ||||| Sbjct 7241 TGCTGCGTTTGCGTATGC-TTTC---ATTTGCTTCGTACTCGGTGTACAGGCGCTCAAAC 7186 Query 123647 TTCTTCTGGTCGGAGAAGAAATACTCGTACAGCTTGCCACCTGCAACGTTCGGGTGGAAC 123706 | | |||||||| ||||| ||||||| |||| | | | ||| ||| Sbjct 7185 TCGTCCTGGTCGGCAAAGAAGGCATCGTACA---AGCCAGGGATATCATGCGGTGAAAAC 7129 Query 123707 AGAGTGATATT-TCGCCCATGTTGCAGACGTGCATACAGCATTTTGTTGATTTGCAGGCC 123765 |||||||| || | |||| || | ||| || |||| || |||||| |||| ||| Sbjct 7128 AGAGTGATGTTCTGGCCCTTGAT-CAGGCGCTGGTACATCAGGCGGTTGATCTGCACGCC 7070 Query 123766 GTAGTCAACGTGACGAGCACGGGTGCTCTCTGTGCCACGGTTGTTCTTCATCACGATCAG 123825 || || | ||||| ||||| | ||| ||| |||||||| |||| ||| | ||| Sbjct 7069 ATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTTTTCAGCACCAGCAG 7010 Query 123826 GTTTTCGAAATCCCAGTGCCACATAGGGTAGAAGTAAGTTGCCGAAGCCTTACGTACACC 123885 ||||| || |||||||| |||||||| | || |||| | || ||||| Sbjct 7009 TGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCCCCACCCCGCACACC 6950 Query 123886 ACCCTG-----AGATGTCCACCCCAGACCTTCTTGGTA-AGAACGGACGATCGGCACAGT 123939 ||||| || | |||| ||||| ||| | || | | || ||||| Sbjct 6949 GCCCTGCGAGCAGGATTTCACCGCAGAC-----TGGAACAGTTTGTA-GAACGGCAGGCA 6896 Query 123940 TCCTGCGTGTTTCACCTCTCCGCCACGGA--TTGGTGCGTCCTGACCACGAATCATGCCA 123997 || | |||| | | || |||||||| | | | ||| || | | || || ||| Sbjct 6895 ACCGGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGC--CCAGCGCGCGGATGCGGCCC 6838 Query 123998 AAGTTAAGGCCGATCCCTGCTCGCTGGGCAGCGTA-TTTAC-CTTGCGC-CGTCAGTGCG 124054 ||| | ||| || || || || || | | || || || | |||| || ||| Sbjct 6837 GCGTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGATCGCGCTGGTGGTTGCA 6778 Query 124055 TTGAAGATCTGGTCGATATCATCGCCGGACTCGATCAATACGCAAGAACTGAACTGTCGT 124114 |||| | | | | | ||||| | ||||||||| |||||| || |||||||| || Sbjct 6777 TTGATGCTGTCCAGGCTGTCATCAC---ACTCGATCAGTACGCAGGAGCTGAACTGGCGC 6721 Query 124115 GTCGGAGTACGAACACCCGCCATGATCGGTGTCGGCAGAGACACCTTCATCAGG--GACA 124172 || |||||||| ||||| |||||||| || || ||||| || | ||| | ||| |||| Sbjct 6720 GTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGATCTTGA--AGGTAGACA 6663 Query 124173 CGTTCTCGTACAGATCAACGATACGCTCCAGACGAG--TGGCCTTGTCCTCCTTGGACAG 124230 | ||||| | ||| ||| || || | |||||| | | |||| | Sbjct 6662 CCGCATCGTAAAAGCGCTTGATGTACTCGAGGCGCGCCTGGCCT--TTGTAGTTGGCAAA 6605 Query 124231 AAGGCCCATTGCAATCAGCAT-CAGCGCCATCTGTGGAGATTCGTAAATCTCGCCAGAGA 124289 |||| ||| || | ||| || || | | ||| || ||||| || | | || Sbjct 6604 CAGGCTCATCGCCACCAGGATGTAGAG-AAACTGCGGGCTCTCGTAGATTTTTTTGGTGA 6546 Query 124290 CACGGTTCTTGACCAGATACTTGTCTTCGTACTGACGCATCGCTGCATAAGTGTAGTCGA 124349 ||||||| | ||||| || ||| | || ||| | ||| ||||||| | | | | Sbjct 6545 CACGGTTTTGCACCAGGTATTTGCCCTCAAGCTGCTTGACCGCCGCATAAGAGAAATTCA 6486 Query 124350 AGTCACGATCGTGTACGATCTTGCCGTCGAGGAAGTCGATTTCGTCACGGCTGTAGTCTT 124409 ||| || ||| | || | ||| | | | |||| ||| |||||| |||| || Sbjct 6485 TGTCGCGCCAGTGGTCAATGTAGCCATTCAATACATCGAATTCTTCACGGGTGTAATCAC 6426 Query 124410 CCAGCAGGTGACGGTCATACTTCCCATTCCCA-ACA-TTCAGATAAATCTGCTCGAACAG 124467 ||||| || ||||||| || || | || || ||| | | || |||||||| Sbjct 6425 GCAGCAAATGCGGGTCATATTTGCCGAGCTCAGTCAGGCCAGTGACA--TGGTCGAACAG 6368 Query 124468 GCTGAATGGCTTGAAGTCACCATACGCCTCTTTTCGGATCTTGAACAGCAGCAGTCGTGC 124527 | |||| || | |||||||| || || | | || | | ||| ||||| Sbjct 6367 GTGTGGCGGCTCAAACTGGCCATACGCGATCTTGCGCAGGTGAAAAATCGACAGGCGTGC 6308 Query 124528 AGCGGCATACTGATAATCCGGGTTCTGTACACTGATCAGGTCTGAAGCGGCTTTGATCAG 124587 || |||||| |||||||| | | | || ||||||||| | ||||| ||||| | Sbjct 6307 CGCCAGATACTGGTAATCCGGCGTTTCTTCAGAGATCAGGTCAGCAGCGGACTTGATGAT 6248 Query 124588 GGTGTCATGAAT 124599 ||| ||||| || Sbjct 6247 GGTTTCATGGAT 6236 >seq466 Length=30285 Score = 102 bits (112), Expect = 8e-17 Identities = 206/300 (69%), Gaps = 7/300 (2%) Strand=Plus/Minus Query 115163 GCGATCGCATTGATAGTCAGGTCCCGGCGGGCCAAGTCCTCTTCGATGGTCACATCTGGG 115222 ||||| |||||||| || | ||| || ||||| | || ||||| | || || || ||| Sbjct 4579 GCGATGGCATTGATGGTAAAGTCGCGCCGGGCAAGATCTTCTTCCAGTGTGACCTC-GGG 4521 Query 115223 CTGAACATA-ACTTCGAAATCGTGGTATCCGTCCCCGGTAGAGCGCTCTTTACGTGCCAG 115281 | | |||| || || || | | || || | | || |||||| | |||||||| Sbjct 4520 CGCAGCATACACATCAAAGCCTTTATAGCCCTTGGCAGTTTTGCGCTCGGTGCGTGCCAG 4461 Query 115282 TGCATACTCTTCCTTTGTCTCTGGGTGCAGGTACACCGGGAAGGCAGCGCCGTGCGGCAT 115341 |||| ||| | || ||||||||||||| | ||||||| ||| | ||| | ||| Sbjct 4460 GGCATGCTCCTGCTGGGTCTCTGGGTGCAAGAACACCGGAAAGTCTTTACCGA-CAGCA- 4403 Query 115342 ACCGAACCCCAGAGACAGC-ATTTCTTCATGGGTTGAGCCAACAACCACGTAATCACGGT 115400 |||| || | | | || |||| ||| |||| | || || ||||| |||||||||| Sbjct 4402 --CGAAAGCCTGCGGCCGCCATTTGCTCAGGGGTGGCACCCACCACCACATAATCACGGT 4345 Query 115401 CCTTGCTCGGAACACCCATCAGTTCATCGCGGACTGCTCCGCCGACCAAATAAATTTTCA 115460 ||||| ||| | || | ||| || ||||| || ||||| ||| ||||||| || Sbjct 4344 CCTTGACCGGCAGCCCGAGCAGGCTGTCACGGACCGCACCGCCTACCTGGTAAATTTGCA 4285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485972402433120