Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq1731 190 7e-43 seq8574 96.9 1e-14 seq3776 87.8 6e-12 >seq1731 Length=13303 Score = 190 bits (210), Expect = 7e-43 Identities = 291/415 (70%), Gaps = 0/415 (0%) Strand=Plus/Plus Query 188777 TTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATG 188836 ||||||| || || |||||||||||| | |||| ||||||||||| | || ||| Sbjct 38 TTGGCCCGACCGGCTCAGGTAAAACACTGCTTGCACAAACATTGGCGCGCTTATTGGATG 97 Query 188837 TACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATG 188896 | ||| | | || | |||||||| | ||||| |||||||||||||| || ||||| | Sbjct 98 TGCCTTTTGTCATGGCCGATGCAACGACCTTAACTGAAGCTGGTTATGTGGGCGAAGACG 157 Query 188897 TGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAAC 188956 | || ||| | ||| | | ||| | |||||| || | || ||| ||| Sbjct 158 TTGAGAACATTATGCAGAAACTGCTGCAAAAATGTGATTATGACGTTGAGAAAGCCCAAC 217 Query 188957 GTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCA 189016 |||| ||||| || |||||||| || ||||| ||| | | || || || | | || | Sbjct 218 GTGGCATTGTCTACATCGATGAGGTCGATAAGATTTCCCGCAAGTCTGACAATCCCTCTA 277 Query 189017 TTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTA 189076 | || || ||||| ||||| ||||| |||||||| || || || ||| | || ||||| | Sbjct 278 TCACGCGTGATGTTTCTGGTGAAGGCGTACAGCAGGCATTGTTGAAACTGATCGAAGGCA 337 Query 189077 CAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAA 189136 | |||| || || || ||||| ||||| || || ||| |||| ||| | | || Sbjct 338 CCATTGCCTCCGTCCCCCCACAAGGCGGTCGCAAGCATCCTAACCAGGAATTTGTGCAAT 397 Query 189137 TAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAA 189191 | ||||| || |||||| |||| || || || || |||||||| || ||||| Sbjct 398 TGGATACCACCAATATCCTGTTCATCTGCGGCGGTGCATTTGATGGCCTGGAAAA 452 >seq8574 Length=1013 Score = 96.9 bits (106), Expect = 1e-14 Identities = 223/334 (67%), Gaps = 4/334 (1%) Strand=Plus/Minus Query 188866 TTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCG--TTTAATCC 188923 || || ||| | || ||||| ||||| || ||||||| ||||| ||| |||| | | Sbjct 565 TTTACCGAATCGGGCTATGTGGGTGAGGACGTGGAAA--GTATTTTATCGCGTTTATTAC 508 Query 188924 AAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAG 188983 | | | | |||||||| | | ||| |||||||| ||||| | ||| || || | | Sbjct 507 AGGTATGTAATTACGATGTGGCTGCAGCAGAACGTGGCATTGTGTTTATTGACGAGATTG 448 Query 188984 ATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAG 189043 ||||| | || | ||| || | | | ||||||||||| |||||| || ||||| | Sbjct 447 ATAAAGTGGCCCGTAAAGGCGATAACCCTTCCATTACCCGCGATGTAAGCGGTGAAGGTG 388 Query 189044 TACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTG 189103 |||| || | | | | || | | ||||| | | | || || || || |||| Sbjct 387 TACAACAGGGTATGCTGAAGTTACTGGAAGGATCGGAAGTACTGGTACCACCGCAGGGTG 328 Query 189104 GTCGTAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTC 189163 | || |||||||| | ||| | || | | || | ||| ||||| |||||||| Sbjct 327 GCCGAAAACACCCCGAGCAAAAGCTGGTAAAGATTAACACACAGAATATATTGTTTATCT 268 Query 189164 TTGGTGGAGCGTTTGATGGTCTTGAAAACATTAT 189197 |||||| || ||||| || |||| |||||| Sbjct 267 GTGGTGGTGCATTTGACGGCATTGACCGCATTAT 234 >seq3776 Length=2536 Score = 87.8 bits (96), Expect = 6e-12 Identities = 196/293 (67%), Gaps = 11/293 (4%) Strand=Plus/Plus Query 182239 CGAGCTTTACCTGATGCAAGAGACGGATTAAAACCATCACAACGTCGAATTTTATATGCT 182298 || || ||||| |||| ||| || || || ||||| ||| | || | ||| ||| Sbjct 1421 CGTGCATTACCCGATGTAAGGGATGGCTTTAAACCCGTACACAGGCGTGTACTATTTGCC 1480 Query 182299 TTATGGGATTTAGGAATGCTACCTCATAAACCATATCGAAAATCAGCAACAGTGAATGGC 182358 | || ||||| ||| | ||||| |||| |||||| |||| || || Sbjct 1481 ATGAACGAATTAGGTTTGCATGCGAATAAAGCATACAAAAAATCGGCAAGGGTAGTAGGG 1540 Query 182359 CACGTAATGGGTAATTTCCATCCACATGGTGATACTTATGGTGTA-------ATGGTAAA 182411 | ||| ||||||| | || || || ||||| | | |||||| ||||| Sbjct 1541 GAAGTACTGGGTAAGTATCACCCGCACGGTGACAGCTC-GGTGTACCATGCCATGGTGCG 1599 Query 182412 TATGACAAATGAATTAAGTATTCGATATCCAGTAGTTGATGGTCAGGGTAACTTTGGTAA 182471 | || || | || | | ||| || || || | ||||| || ||||||||||||||||| Sbjct 1600 TTTGGCACAGGACTGGAATATGCGTTACACACTGGTTGACGGCCAGGGTAACTTTGGTAA 1659 Query 182472 CCCATTAGATGGTGATGGTGCAGCAGCGATGCGTTATACTGAAGCACGTTTAG 182524 || |||||||||| | | ||||| ||||||||||| |||| ||||||| Sbjct 1660 CCAG---GATGGTGATGATCCGGCAGCCATGCGTTATACCGAAGTGCGTTTAG 1709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591721060664384