Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_024121.1
Length=167266
Score E
Sequences producing significant alignments: (Bits) Value
seq2003 190 2e-43
>seq2003
Length=7520
Score = 190 bits (210), Expect = 2e-43
Identities = 291/412 (71%), Gaps = 2/412 (0%)
Strand=Plus/Minus
Query 139708 ACATCAGATCGTTGATTTGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGC 139767
||||||| |||||| ||||| || ||||| | ||||| | ||||| ||||| ||||
Sbjct 7094 ACATCAGGCGGTTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGC 7035
Query 139768 CTTTGTTGTTTTTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACA 139827
| |||||||||||| || |||| ||| ||||| | |||||| | || ||| |||
Sbjct 7034 CGCGGTTGTTTTTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACA 6975
Query 139828 ACGTCGCTGCACCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGT 139887
||||||| || ||||| || ||||| || || || |||||||| ||||||| ||||||
Sbjct 6974 ACGTCGCCGCCCCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACA 6915
Query 139888 GTTTCCAGAAAGGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGAGCCTT 139947
|||| |||| || | || || |||| |||| ||| || || | |||
Sbjct 6914 GTTTGTAGAACGGCAGGCAACCGGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCCCA 6855
Query 139948 CAGCTCGGATTCGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAA 140007
|| ||||| || || ||||||| ||| || || || |||| || | ||||| || |
Sbjct 6854 GCGCGCGGATGCGGCCCGCGTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGA 6795
Query 140008 TCGATGCTGCTGAGT-CGTTGATACTGTTAAGCGAATCATCAGACTCGATAACAACACAC 140066
||| |||| || | | ||||| |||| || |||||| ||||||| | || ||
Sbjct 6794 TCG-CGCTGGTGGTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAG 6736
Query 140067 GAACTGAATTGACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGGCA 140118
|| ||||| || || | || ||||| | || ||||| ||||| || ||||
Sbjct 6735 GAGCTGAACTGGCGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCA 6684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 535061105641680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |