Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_024354.1
Length=149162
Score E
Sequences producing significant alignments: (Bits) Value
seq3915 221 1e-52
seq2003 123 2e-23
seq5988 100 3e-16
>seq3915
Length=2367
Score = 221 bits (244), Expect = 1e-52
Identities = 278/379 (73%), Gaps = 2/379 (1%)
Strand=Plus/Plus
Query 118886 CATGATGTCATCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 118945
|| |||||||||||| | || || || || | ||| || |||||||| ||||||||
Sbjct 664 CACGATGTCATCAAACATGACAGAAGGGTCATTGACGATATTGCGGATGATGTGGGTGTA 723
Query 118946 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGT 119005
|||||| ||||| || ||||| |||||||| ||||| | ||| |||||||| |
Sbjct 724 TGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTCTCGATCCAGGTTTCCAGCTCGGG 783
Query 119006 GTCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAG 119065
||||| | ||| | || | |||| || | ||||||||| | |||||||| ||
Sbjct 784 CAATGACACCAGCGGCAACAAGGCCACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAG 843
Query 119066 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATG-T 119124
|||| |||||||||||||||||||| || ||||| || || || ||||| | || |
Sbjct 844 CGTCTGATACTTCAGGTTGCTGATGAAAATATGCTTTTCATGCTCGGGCAGGC-CTTGAT 902
Query 119125 AGTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCT 119184
|||| ||||| | | ||| | |||||||| |||||||||||||| | ||||| |
Sbjct 903 AGTCAGCGCGGTCTTGCGACACATCGACTTCTTCTGGACGCCAGAAGAAGGAGAGTTGTT 962
Query 119185 TCTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTG 119244
|||||||||||||||||||| | | |||||| |||||||| || | || || |
Sbjct 963 TCTCGATCAGCTTCTCGAACACCGGATATTTCTGTTGGTCATACCGCGCCACATTGACGG 1022
Query 119245 TCTCGCCGAGGAACATCGG 119263
|| ||||| |||||| ||
Sbjct 1023 GCTGGCCGAAGAACATGGG 1041
Score = 109 bits (120), Expect = 5e-19
Identities = 309/472 (65%), Gaps = 17/472 (4%)
Strand=Plus/Plus
Query 119926 CACGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCA 119985
|||| |||||||| | |||||| |||| ||||| ||||| ||||||||||| ||||||
Sbjct 1887 CACGCGGTGGCTCGATACCGTTGGTGGCGTTGGCGATCTGGCTGGACGTCTCTGAAGGCA 1946
Query 119986 TCATCGTGGACAGCGTAGAGTTACGCAGTCCATGAATAGCGATGTCGATACGCAGCTTTT 120045
||| || || ||| || |||||||||| |||| | || ||| ||||| |||
Sbjct 1947 TCAGCGCGGTCAGGGTGGAGTTACGCAAGCCATCTTTCTGAATCTCGGCGCGCAGGCTTT 2006
Query 120046 CCCAATCCATCTTCAGTTCCGCAGTGTGGAGGCCATCTACCTCTTTCTTGTAACGGTCGA 120105
|||| || | | || | | | || || | | || | ||||| ||||| | || |
Sbjct 2007 CCCAGTCGAGCAGCAATGGCTCGTTGCAGACGGCGTCGAGGTCTTTTTTGTAGCTATCAA 2066
Query 120106 TCGGCAGAATGCCCTGAGAGTAAGTGGTCTCGTGGAAGAGATCACATTTACCCAATTCTT 120165
|||||| |||||| | | ||| || || |||| || | ||||| || |||||
Sbjct 2067 TCGGCAAAATGCCTTTGGCGTAGGTAGTTTCGTTAAACGCACCACATGGGCCAAATTCGC 2126
Query 120166 TTGCCAGGTCAACCGACGCTTCCAGTAGGTAATACTGGAATGCTTCA----GCCAGTTCG 120221
| | | || || |||| || ||||||||||| | || ||| | || |
Sbjct 2127 GGGATAACTGCACTGAGGCTTTGAGCAGGTAATACTGAATCGCCTCAAAGGTGCGGTGGG 2186
Query 120222 TGA---ACAGCGTTCGCTGCACGAGGGTCGCTGTATTTCAGGCCACGCTTCGCCAGGTAG 120278
| | ||||| ||| || ||| |||| | ||| ||||||||||||
Sbjct 2187 TCAGTCCCAGCG-CGGCTTCA------TCGGTGTAGCTGGTGCCGTTTTTCGCCAGGTAG 2239
Query 120279 TATGCTAAGTTGGTCCAGCCAATACCCAGAGTACGTCGCAGTTTAGT---CTTCTCTGCC 120335
|| || ||||| || ||| | ||||| | ||| || ||||| || |||
Sbjct 2240 TAAGCGTAGTTGATCACGCCCACGCCCAGTGAACGGCGTTTGTTAGTGGCGTTGAGTGCT 2299
Query 120336 GCCAGAACCGGATAGTTCTGATAATCTAACAGACGATCCAATGCACGAACCA 120387
|| ||||| || | ||| || || |||||| ||||| |||||| ||||
Sbjct 2300 GCTTTGACCGGGTAATCCTGGTATTCCAACAGAGCATCCAGTGCACGCACCA 2351
>seq2003
Length=7520
Score = 123 bits (136), Expect = 2e-23
Identities = 152/207 (73%), Gaps = 8/207 (4%)
Strand=Plus/Minus
Query 120432 CCGAGGTTGATGGCAGACAGAGTACACAGGGCCACTTCCCCCGGGTCGTTCGG-GTCATT 120490
|| ||||| | ||| |||| |||||||| || | ||| || ||||| ||| ||
Sbjct 7473 CCCAGGTTAAAGGCCGACAAGGTACACAGCGCGATTTCGCC-------TTCGGTGTCGTT 7421
Query 120491 AATGTCCGTAATCGGATGTGTCGGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCAC 120550
||||| | | || | || ||||| ||||||||||| |||||||||||||| |||
Sbjct 7420 GATGTCATTCAATGGCTTGGTTGGCAGCGCGATTTCCATACACAGGTTGGACTGACGCAC 7361
Query 120551 CGGGGCCTGTTCGGGGTCGAACGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTA 120610
||| ||| | || || |||||||| | ||||||||||||||||||| ||| | |||
Sbjct 7360 CGGCGCCACGGCAGGATCAAACGGGCTGTGCGTGTTGCAGTGGTCAACGTTCTGGATGTA 7301
Query 120611 AATACGGCCTGTCTGAGAACGCTCCTG 120637
|||||||| || | |||||||||
Sbjct 7300 GATACGGCCGGTACCGGCACGCTCCTG 7274
>seq5988
Length=1363
Score = 100 bits (110), Expect = 3e-16
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 146725 CGGTGTATAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGAT 146784
||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1272 CGGGGTATAGCGCAGTCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGAAGGTTCGAA 1331
Query 146785 TCCAGCTACACCGACCAA 146802
||| |||||||||||
Sbjct 1332 TCCTTTCACACCGACCAA 1349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477135028018960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |