Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq3915 221 1e-52 seq2003 123 2e-23 seq5988 100 3e-16 >seq3915 Length=2367 Score = 221 bits (244), Expect = 1e-52 Identities = 278/379 (73%), Gaps = 2/379 (1%) Strand=Plus/Plus Query 118886 CATGATGTCATCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 118945 || |||||||||||| | || || || || | ||| || |||||||| |||||||| Sbjct 664 CACGATGTCATCAAACATGACAGAAGGGTCATTGACGATATTGCGGATGATGTGGGTGTA 723 Query 118946 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGT 119005 |||||| ||||| || ||||| |||||||| ||||| | ||| |||||||| | Sbjct 724 TGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTCTCGATCCAGGTTTCCAGCTCGGG 783 Query 119006 GTCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAG 119065 ||||| | ||| | || | |||| || | ||||||||| | |||||||| || Sbjct 784 CAATGACACCAGCGGCAACAAGGCCACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAG 843 Query 119066 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATG-T 119124 |||| |||||||||||||||||||| || ||||| || || || ||||| | || | Sbjct 844 CGTCTGATACTTCAGGTTGCTGATGAAAATATGCTTTTCATGCTCGGGCAGGC-CTTGAT 902 Query 119125 AGTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCT 119184 |||| ||||| | | ||| | |||||||| |||||||||||||| | ||||| | Sbjct 903 AGTCAGCGCGGTCTTGCGACACATCGACTTCTTCTGGACGCCAGAAGAAGGAGAGTTGTT 962 Query 119185 TCTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTG 119244 |||||||||||||||||||| | | |||||| |||||||| || | || || | Sbjct 963 TCTCGATCAGCTTCTCGAACACCGGATATTTCTGTTGGTCATACCGCGCCACATTGACGG 1022 Query 119245 TCTCGCCGAGGAACATCGG 119263 || ||||| |||||| || Sbjct 1023 GCTGGCCGAAGAACATGGG 1041 Score = 109 bits (120), Expect = 5e-19 Identities = 309/472 (65%), Gaps = 17/472 (4%) Strand=Plus/Plus Query 119926 CACGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCA 119985 |||| |||||||| | |||||| |||| ||||| ||||| ||||||||||| |||||| Sbjct 1887 CACGCGGTGGCTCGATACCGTTGGTGGCGTTGGCGATCTGGCTGGACGTCTCTGAAGGCA 1946 Query 119986 TCATCGTGGACAGCGTAGAGTTACGCAGTCCATGAATAGCGATGTCGATACGCAGCTTTT 120045 ||| || || ||| || |||||||||| |||| | || ||| ||||| ||| Sbjct 1947 TCAGCGCGGTCAGGGTGGAGTTACGCAAGCCATCTTTCTGAATCTCGGCGCGCAGGCTTT 2006 Query 120046 CCCAATCCATCTTCAGTTCCGCAGTGTGGAGGCCATCTACCTCTTTCTTGTAACGGTCGA 120105 |||| || | | || | | | || || | | || | ||||| ||||| | || | Sbjct 2007 CCCAGTCGAGCAGCAATGGCTCGTTGCAGACGGCGTCGAGGTCTTTTTTGTAGCTATCAA 2066 Query 120106 TCGGCAGAATGCCCTGAGAGTAAGTGGTCTCGTGGAAGAGATCACATTTACCCAATTCTT 120165 |||||| |||||| | | ||| || || |||| || | ||||| || ||||| Sbjct 2067 TCGGCAAAATGCCTTTGGCGTAGGTAGTTTCGTTAAACGCACCACATGGGCCAAATTCGC 2126 Query 120166 TTGCCAGGTCAACCGACGCTTCCAGTAGGTAATACTGGAATGCTTCA----GCCAGTTCG 120221 | | | || || |||| || ||||||||||| | || ||| | || | Sbjct 2127 GGGATAACTGCACTGAGGCTTTGAGCAGGTAATACTGAATCGCCTCAAAGGTGCGGTGGG 2186 Query 120222 TGA---ACAGCGTTCGCTGCACGAGGGTCGCTGTATTTCAGGCCACGCTTCGCCAGGTAG 120278 | | ||||| ||| || ||| |||| | ||| |||||||||||| Sbjct 2187 TCAGTCCCAGCG-CGGCTTCA------TCGGTGTAGCTGGTGCCGTTTTTCGCCAGGTAG 2239 Query 120279 TATGCTAAGTTGGTCCAGCCAATACCCAGAGTACGTCGCAGTTTAGT---CTTCTCTGCC 120335 || || ||||| || ||| | ||||| | ||| || ||||| || ||| Sbjct 2240 TAAGCGTAGTTGATCACGCCCACGCCCAGTGAACGGCGTTTGTTAGTGGCGTTGAGTGCT 2299 Query 120336 GCCAGAACCGGATAGTTCTGATAATCTAACAGACGATCCAATGCACGAACCA 120387 || ||||| || | ||| || || |||||| ||||| |||||| |||| Sbjct 2300 GCTTTGACCGGGTAATCCTGGTATTCCAACAGAGCATCCAGTGCACGCACCA 2351 >seq2003 Length=7520 Score = 123 bits (136), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 120432 CCGAGGTTGATGGCAGACAGAGTACACAGGGCCACTTCCCCCGGGTCGTTCGG-GTCATT 120490 || ||||| | ||| |||| |||||||| || | ||| || ||||| ||| || Sbjct 7473 CCCAGGTTAAAGGCCGACAAGGTACACAGCGCGATTTCGCC-------TTCGGTGTCGTT 7421 Query 120491 AATGTCCGTAATCGGATGTGTCGGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCAC 120550 ||||| | | || | || ||||| ||||||||||| |||||||||||||| ||| Sbjct 7420 GATGTCATTCAATGGCTTGGTTGGCAGCGCGATTTCCATACACAGGTTGGACTGACGCAC 7361 Query 120551 CGGGGCCTGTTCGGGGTCGAACGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTA 120610 ||| ||| | || || |||||||| | ||||||||||||||||||| ||| | ||| Sbjct 7360 CGGCGCCACGGCAGGATCAAACGGGCTGTGCGTGTTGCAGTGGTCAACGTTCTGGATGTA 7301 Query 120611 AATACGGCCTGTCTGAGAACGCTCCTG 120637 |||||||| || | ||||||||| Sbjct 7300 GATACGGCCGGTACCGGCACGCTCCTG 7274 >seq5988 Length=1363 Score = 100 bits (110), Expect = 3e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 146725 CGGTGTATAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGAT 146784 ||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 1272 CGGGGTATAGCGCAGTCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGAAGGTTCGAA 1331 Query 146785 TCCAGCTACACCGACCAA 146802 ||| ||||||||||| Sbjct 1332 TCCTTTCACACCGACCAA 1349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477135028018960