Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq1314 138 2e-27
seq315 125 1e-23
>seq1314
Length=13110
Score = 138 bits (152), Expect = 2e-27
Identities = 148/193 (77%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682
|| || || || || || || || | | ||||||||| ||||| || || ||||||||
Sbjct 2069 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2128
Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTC 82741
|| | || || || ||||| || ||||||||||| |||||||| ||| || ||||| ||
Sbjct 2129 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGC-TTCACATTGTC 2187
Query 82742 AATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801
||| | || || || || |||| || ||||||||||||||||||||||| |||||
Sbjct 2188 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAAA 2247
Query 82802 TATCTGCATTATT 82814
|||||||| |||
Sbjct 2248 GATCTGCATGATT 2260
>seq315
Length=59289
Score = 125 bits (138), Expect = 1e-23
Identities = 159/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || | |||||| || || || ||||| || ||||| ||| || | | |||
Sbjct 38278 CGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCACTCAGCGTACGGCCG 38337
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| || || || || |||||||| || | || || || || || || || |||||
Sbjct 38338 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 38397
Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
|| || ||||| ||||| ||||| ||||||| ||| || || || |||| || ||
Sbjct 38398 TCCTGGATCTTCTGCTTC-ACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGAT 38456
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||| |||||||||||||| || || ||||||||
Sbjct 38457 CGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38492
Score = 122 bits (134), Expect = 2e-22
Identities = 158/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || | |||||| || ||||| ||||| || || || || || | | |||
Sbjct 38581 CGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCG 38640
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| || || || || |||||||| || | || || || || || || || |||||
Sbjct 38641 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 38700
Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
|| || ||||| ||||| ||||| ||||||| ||| || || || |||| || ||
Sbjct 38701 TCCTGGATCTTCTGCTTC-ACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGAT 38759
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||| |||||||||||||| || || ||||||||
Sbjct 38760 CGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981710423006937
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |