Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1314 138 2e-27 seq315 125 1e-23 >seq1314 Length=13110 Score = 138 bits (152), Expect = 2e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || || || || || || || | | ||||||||| ||||| || || |||||||| Sbjct 2069 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2128 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTC 82741 || | || || || ||||| || ||||||||||| |||||||| ||| || ||||| || Sbjct 2129 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGC-TTCACATTGTC 2187 Query 82742 AATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 ||| | || || || || |||| || ||||||||||||||||||||||| ||||| Sbjct 2188 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAAA 2247 Query 82802 TATCTGCATTATT 82814 |||||||| ||| Sbjct 2248 GATCTGCATGATT 2260 >seq315 Length=59289 Score = 125 bits (138), Expect = 1e-23 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | |||||| || || || ||||| || ||||| ||| || | | ||| Sbjct 38278 CGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCACTCAGCGTACGGCCG 38337 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || |||||||| || | || || || || || || || ||||| Sbjct 38338 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 38397 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||||| ||||| ||||||| ||| || || || |||| || || Sbjct 38398 TCCTGGATCTTCTGCTTC-ACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGAT 38456 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| |||||||||||||| || || |||||||| Sbjct 38457 CGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38492 Score = 122 bits (134), Expect = 2e-22 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | |||||| || ||||| ||||| || || || || || | | ||| Sbjct 38581 CGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCG 38640 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || |||||||| || | || || || || || || || ||||| Sbjct 38641 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 38700 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||||| ||||| ||||||| ||| || || || |||| || || Sbjct 38701 TCCTGGATCTTCTGCTTC-ACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGAT 38759 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| |||||||||||||| || || |||||||| Sbjct 38760 CGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981710423006937