Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq179 172 5e-38 seq315 132 5e-26 seq69 132 5e-26 seq5172 105 6e-18 seq1314 104 2e-17 >seq179 Length=46302 Score = 172 bits (190), Expect = 5e-38 Identities = 384/573 (67%), Gaps = 5/573 (1%) Strand=Plus/Plus Query 147954 CGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGAC 148013 |||| || ||||| ||||||||||| ||| | ||| ||||| ||||| ||||| | Sbjct 20568 CGCATGTAATACATACCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGACGTC 20627 Query 148014 ATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCAATGAAC 148073 | || |||||| | || | | | ||| | ||||||||||||| |||| || Sbjct 20628 AGCTTACTGATCGTCGGATCCGCAATATGAATATTGAGCGACTGGCTCTGGCAAATGTAC 20687 Query 148074 GCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCCGTCTT 148132 |||||||| ||||| | | || | || ||| || | ||| || ||||| | ||||| Sbjct 20688 GCGCCACGATCAGCCGAGAGATCCAAGA-TCGACTTCTGCTTAATTTCCCACACTGTCTT 20746 Query 148133 GTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGTGCGC 148192 |||| ||||| || || || ||| | | ||||| ||||| | || Sbjct 20747 GTACTTTTCCTTGACATCATTCGGGATGGTCTTAACCTTTTGCACGGAGCCACCGTCGTT 20806 Query 148193 AAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGATCAG 148252 | ||| || ||||| | |||| ||| | | | || || |||| || | ||||| Sbjct 20807 CAGAATTTGGTTGCGGACTTCGGGCGTCCAGATGCCCAGGTCAATCAATTCCTTCATCAG 20866 Query 148253 ATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGT 148312 |||| || || | | ||||||||| || |||||||| || |||| || ||| Sbjct 20867 GTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGGTTGTACATATTCGACGT 20926 Query 148313 AAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTA 148372 |||| |||| ||||||||||||||||| |||||| || |||| ||||| ||||| Sbjct 20927 GTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCGGCATTGG 20986 Query 148373 CGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCA 148432 ||| || ||||| |||||||| | || || | | || ||||| ||| ||| Sbjct 20987 CGCCACGAGCAGAGAGTTGCGAATGCCATACTTGATCACGTTCTCCTTCAACTCCGTCCA 21046 Query 148433 GTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCT 148489 |||||| || | |||||| || ||| |||||||||| |||| | || || ||| Sbjct 21047 GTCCCAAAGACCTGACGACGGCGTGACGCCCCACATGTCGAACTGGAAGATCCCCTTGCT 21106 Query 148490 AGCGGGGCTGCCCTCGTACGAGCTGTACGGTCC 148522 || || ||||| | ||| |||||| || Sbjct 21107 CGCTGGAGAGCCCTGGAACGTCTCGTACGGACC 21139 >seq315 Length=59289 Score = 132 bits (146), Expect = 5e-26 Identities = 150/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || || ||||| || ||||| |||| || ||| ||| ||| || |||||||||| Sbjct 38599 GTCGATTCCTTCTGGATGTTGTAGTCGCTCAGCGT--ACGGCCGTCTTCCAGCTGCTTGC 38656 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||||||||||||| || |||||||| |||||||| |||||| |||| Sbjct 38657 CGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCT 38716 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| || ||| | ||||||||||| | |||| || || || |||| | Sbjct 38717 TCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACG 38776 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 38777 TCTTCACGAAAATCTGCAT 38795 Score = 131 bits (144), Expect = 2e-25 Identities = 150/200 (75%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || || || || | || ||| ||| ||| || |||||||||| Sbjct 38296 GTCGACTCCTTCTGGATGTTATAGTCACTCAGCGT--ACGGCCGTCTTCCAGCTGCTTGC 38353 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||||||||||||| || |||||||| |||||||| |||||| |||| Sbjct 38354 CGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCT 38413 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| || ||| | ||||||||||| | |||| || || || |||| | Sbjct 38414 TCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACG 38473 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||||||||||||| Sbjct 38474 TCTTCACGAAAATCTGCATG 38493 >seq69 Length=63067 Score = 132 bits (146), Expect = 5e-26 Identities = 499/768 (65%), Gaps = 21/768 (3%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| || || ||||| |||||||| || ||||||| | ||| || ||| ||| Sbjct 13393 GTACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCAT 13334 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACT-GTACGAGCAGTC 120472 | || || ||||| | || | || |||| | ||| | | |||| | ||| | Sbjct 13333 CCAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAGTACAA-CAGGC 13275 Query 120473 GGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCA 120532 |||||||||||||||||||||||| ||||||| | || ||||||||| | || | | | Sbjct 13274 GGTCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAA 13215 Query 120533 CCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGA 120592 | |||| || | | |||||| | ||| || ||| || || | || | | Sbjct 13214 CGGGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGAATGATCGTGT 13155 Query 120593 GCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTAC---AGGCACGCAA 120649 | | || |||||| || ||||| | || | | ||||| |||||||||| Sbjct 13154 GGACGCGGTCCTCGGGCAGCT--TGTTC-ACTAGCTT---GGAGTACATGAGGCACGCAA 13101 Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709 |||||||||||| |||||| || || || |||||||| || | ||||| |||| Sbjct 13100 AGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 13041 Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769 ||| || | |||| | | || || | | || |||||| ||||| | ||| | Sbjct 13040 TGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTT 12981 Query 120770 CCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG-CTGTCGATCCAC 120828 | || |||||| || | || ||||| || ||| | |||| |||| |||| Sbjct 12980 CGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGAAG-ATACTTGTGGGTCGCACCAC 12922 Query 120829 TTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGC 120888 || | ||||| | ||| || || || || ||||| || ||| | |||| ||| || Sbjct 12921 TTGAGCGCCCAATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGG 12862 Query 120889 ATGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTG 120948 || ||| | |||| ||| | | |||||||| || | ||||| | Sbjct 12861 TGATCCTTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAG 12802 Query 120949 TGCACGCACTCGATCAGCACTTGCTGGTTG---TAAAAGTACTGCGCCTCCAGCTCGGGC 121005 || | | || ||| || | |||| | |||||| || | || ||| || | || Sbjct 12801 TGGATGTTTTCAATC-GCGAT--CTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGC 12745 Query 121006 ACCGC-CCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAA 121064 || | ||| | || | | || || ||||| || | || ||| || || Sbjct 12744 ACTTCATTGCT-AAAGTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAA 12686 Query 121065 GAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTT 121112 ||| || ||||| |||||||||||||| ||||| | ||||||||| || Sbjct 12685 GAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTT 12638 >seq5172 Length=1594 Score = 105 bits (116), Expect = 6e-18 Identities = 339/516 (66%), Gaps = 19/516 (4%) Strand=Plus/Plus Query 120355 TACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATA 120414 ||||| ||| ||||| ||||| || || |||||||| | | ||||| | |||| Sbjct 968 TACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAATGAAATCAGTTCCATA 1027 Query 120415 AACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACG-AGCAGTCG 120473 || || || || || |||| | | ||| |||| |||| ||| | ||||| || Sbjct 1028 AAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAG-TGTCAGTAGCAGGCG 1086 Query 120474 GTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCAC 120533 ||| || |||||||| ||||||| ||| | |||||||| || | || || Sbjct 1087 GTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCATACCGATCAGGCGTAC 1146 Query 120534 CGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAG 120593 ||||| || |||| ||| |||| ||||| | ||||| || | || | | Sbjct 1147 AGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGTCGGCAATAATCTCACG 1206 Query 120594 CATA-GTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGT 120652 || || |||||| | ||| | || | || | |||| || ||| || |||| Sbjct 1207 CAGGCGTTCAGCCGGG-AGCTTAT-TTAAAAGCTGCT--GGTACAGCAAGCAGGCGAAGT 1262 Query 120653 CCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGA 120712 | || |||| ||| || ||||| || ||||| || || ||| ||| ||| ||||| | Sbjct 1263 CAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAACTCAAGCCCGGCATCA 1322 Query 120713 TGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCA 120772 ||| | | || | |||| |||| | ||||| || |||||||| | ||| || | Sbjct 1323 GGCCACGCTTTTTAAGCCAGAAAATGGAGCAGAAGCTACCAGAAAAGAAAATGCCTTCAA 1382 Query 120773 CGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCA 120832 | |||||||||||| | |||||| || || || | ||| | |||||||| || Sbjct 1383 TGGCGGCAAAGGCGACAAGGCGCTCAGCAAA----GCTGCCTT--TTTCGATCCAGCGCA 1436 Query 120833 TGGCCCACTCGGCCTTTTTGCG---CACGCACGGCA 120865 |||||||| || |||||| ||||| |||| Sbjct 1437 GAGCCCACTCAGC---TTTGCGGGTGACGCAAGGCA 1469 >seq1314 Length=13110 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || || |||||||| || | || || ||||||||||| ||||| ||||||||||| Sbjct 2101 GTCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTT 2160 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||||| ||||| | | |||| |||||| ||||||||||| | |||| Sbjct 2161 ATCCTGAATCTTCTGCTTCACATTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGAT 2220 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| |||| || || || || ||||||||| Sbjct 2221 CGTCTTGCCTGTCAACGTCTTCACAAAGATCTGCATG 2257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483364705058920