Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq179 172 5e-38
seq315 132 5e-26
seq69 132 5e-26
seq5172 105 6e-18
seq1314 104 2e-17
>seq179
Length=46302
Score = 172 bits (190), Expect = 5e-38
Identities = 384/573 (67%), Gaps = 5/573 (1%)
Strand=Plus/Plus
Query 147954 CGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGAC 148013
|||| || ||||| ||||||||||| ||| | ||| ||||| ||||| ||||| |
Sbjct 20568 CGCATGTAATACATACCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGACGTC 20627
Query 148014 ATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCAATGAAC 148073
| || |||||| | || | | | ||| | ||||||||||||| |||| ||
Sbjct 20628 AGCTTACTGATCGTCGGATCCGCAATATGAATATTGAGCGACTGGCTCTGGCAAATGTAC 20687
Query 148074 GCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCCGTCTT 148132
|||||||| ||||| | | || | || ||| || | ||| || ||||| | |||||
Sbjct 20688 GCGCCACGATCAGCCGAGAGATCCAAGA-TCGACTTCTGCTTAATTTCCCACACTGTCTT 20746
Query 148133 GTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGTGCGC 148192
|||| ||||| || || || ||| | | ||||| ||||| | ||
Sbjct 20747 GTACTTTTCCTTGACATCATTCGGGATGGTCTTAACCTTTTGCACGGAGCCACCGTCGTT 20806
Query 148193 AAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGATCAG 148252
| ||| || ||||| | |||| ||| | | | || || |||| || | |||||
Sbjct 20807 CAGAATTTGGTTGCGGACTTCGGGCGTCCAGATGCCCAGGTCAATCAATTCCTTCATCAG 20866
Query 148253 ATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGT 148312
|||| || || | | ||||||||| || |||||||| || |||| || |||
Sbjct 20867 GTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGGTTGTACATATTCGACGT 20926
Query 148313 AAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTA 148372
|||| |||| ||||||||||||||||| |||||| || |||| ||||| |||||
Sbjct 20927 GTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCGGCATTGG 20986
Query 148373 CGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCA 148432
||| || ||||| |||||||| | || || | | || ||||| ||| |||
Sbjct 20987 CGCCACGAGCAGAGAGTTGCGAATGCCATACTTGATCACGTTCTCCTTCAACTCCGTCCA 21046
Query 148433 GTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCT 148489
|||||| || | |||||| || ||| |||||||||| |||| | || || |||
Sbjct 21047 GTCCCAAAGACCTGACGACGGCGTGACGCCCCACATGTCGAACTGGAAGATCCCCTTGCT 21106
Query 148490 AGCGGGGCTGCCCTCGTACGAGCTGTACGGTCC 148522
|| || ||||| | ||| |||||| ||
Sbjct 21107 CGCTGGAGAGCCCTGGAACGTCTCGTACGGACC 21139
>seq315
Length=59289
Score = 132 bits (146), Expect = 5e-26
Identities = 150/199 (75%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
|| || || ||||| || ||||| |||| || ||| ||| ||| || ||||||||||
Sbjct 38599 GTCGATTCCTTCTGGATGTTGTAGTCGCTCAGCGT--ACGGCCGTCTTCCAGCTGCTTGC 38656
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || |||||||||||||| || |||||||| |||||||| |||||| ||||
Sbjct 38657 CGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCT 38716
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | |||| || ||| | ||||||||||| | |||| || || || |||| |
Sbjct 38717 TCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACG 38776
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||||||||||||
Sbjct 38777 TCTTCACGAAAATCTGCAT 38795
Score = 131 bits (144), Expect = 2e-25
Identities = 150/200 (75%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
|| ||||| ||||| || || || || | || ||| ||| ||| || ||||||||||
Sbjct 38296 GTCGACTCCTTCTGGATGTTATAGTCACTCAGCGT--ACGGCCGTCTTCCAGCTGCTTGC 38353
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || |||||||||||||| || |||||||| |||||||| |||||| ||||
Sbjct 38354 CGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCT 38413
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | |||| || ||| | ||||||||||| | |||| || || || |||| |
Sbjct 38414 TCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACG 38473
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || |||||||||||||||
Sbjct 38474 TCTTCACGAAAATCTGCATG 38493
>seq69
Length=63067
Score = 132 bits (146), Expect = 5e-26
Identities = 499/768 (65%), Gaps = 21/768 (3%)
Strand=Plus/Minus
Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413
||||||||| || || ||||| |||||||| || ||||||| | ||| || ||| |||
Sbjct 13393 GTACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCAT 13334
Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACT-GTACGAGCAGTC 120472
| || || ||||| | || | || |||| | ||| | | |||| | ||| |
Sbjct 13333 CCAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAGTACAA-CAGGC 13275
Query 120473 GGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCA 120532
|||||||||||||||||||||||| ||||||| | || ||||||||| | || | | |
Sbjct 13274 GGTCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAA 13215
Query 120533 CCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGA 120592
| |||| || | | |||||| | ||| || ||| || || | || | |
Sbjct 13214 CGGGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGAATGATCGTGT 13155
Query 120593 GCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTAC---AGGCACGCAA 120649
| | || |||||| || ||||| | || | | ||||| ||||||||||
Sbjct 13154 GGACGCGGTCCTCGGGCAGCT--TGTTC-ACTAGCTT---GGAGTACATGAGGCACGCAA 13101
Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709
|||||||||||| |||||| || || || |||||||| || | ||||| ||||
Sbjct 13100 AGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 13041
Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769
||| || | |||| | | || || | | || |||||| ||||| | ||| |
Sbjct 13040 TGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTT 12981
Query 120770 CCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG-CTGTCGATCCAC 120828
| || |||||| || | || ||||| || ||| | |||| |||| ||||
Sbjct 12980 CGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGAAG-ATACTTGTGGGTCGCACCAC 12922
Query 120829 TTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGC 120888
|| | ||||| | ||| || || || || ||||| || ||| | |||| ||| ||
Sbjct 12921 TTGAGCGCCCAATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGG 12862
Query 120889 ATGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTG 120948
|| ||| | |||| ||| | | |||||||| || | ||||| |
Sbjct 12861 TGATCCTTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAG 12802
Query 120949 TGCACGCACTCGATCAGCACTTGCTGGTTG---TAAAAGTACTGCGCCTCCAGCTCGGGC 121005
|| | | || ||| || | |||| | |||||| || | || ||| || | ||
Sbjct 12801 TGGATGTTTTCAATC-GCGAT--CTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGC 12745
Query 121006 ACCGC-CCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAA 121064
|| | ||| | || | | || || ||||| || | || ||| || ||
Sbjct 12744 ACTTCATTGCT-AAAGTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAA 12686
Query 121065 GAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTT 121112
||| || ||||| |||||||||||||| ||||| | ||||||||| ||
Sbjct 12685 GAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTT 12638
>seq5172
Length=1594
Score = 105 bits (116), Expect = 6e-18
Identities = 339/516 (66%), Gaps = 19/516 (4%)
Strand=Plus/Plus
Query 120355 TACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATA 120414
||||| ||| ||||| ||||| || || |||||||| | | ||||| | ||||
Sbjct 968 TACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAATGAAATCAGTTCCATA 1027
Query 120415 AACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACG-AGCAGTCG 120473
|| || || || || |||| | | ||| |||| |||| ||| | ||||| ||
Sbjct 1028 AAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAG-TGTCAGTAGCAGGCG 1086
Query 120474 GTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCAC 120533
||| || |||||||| ||||||| ||| | |||||||| || | || ||
Sbjct 1087 GTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCATACCGATCAGGCGTAC 1146
Query 120534 CGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAG 120593
||||| || |||| ||| |||| ||||| | ||||| || | || | |
Sbjct 1147 AGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGTCGGCAATAATCTCACG 1206
Query 120594 CATA-GTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGT 120652
|| || |||||| | ||| | || | || | |||| || ||| || ||||
Sbjct 1207 CAGGCGTTCAGCCGGG-AGCTTAT-TTAAAAGCTGCT--GGTACAGCAAGCAGGCGAAGT 1262
Query 120653 CCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGA 120712
| || |||| ||| || ||||| || ||||| || || ||| ||| ||| ||||| |
Sbjct 1263 CAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAACTCAAGCCCGGCATCA 1322
Query 120713 TGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCA 120772
||| | | || | |||| |||| | ||||| || |||||||| | ||| || |
Sbjct 1323 GGCCACGCTTTTTAAGCCAGAAAATGGAGCAGAAGCTACCAGAAAAGAAAATGCCTTCAA 1382
Query 120773 CGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCA 120832
| |||||||||||| | |||||| || || || | ||| | |||||||| ||
Sbjct 1383 TGGCGGCAAAGGCGACAAGGCGCTCAGCAAA----GCTGCCTT--TTTCGATCCAGCGCA 1436
Query 120833 TGGCCCACTCGGCCTTTTTGCG---CACGCACGGCA 120865
|||||||| || |||||| ||||| ||||
Sbjct 1437 GAGCCCACTCAGC---TTTGCGGGTGACGCAAGGCA 1469
>seq1314
Length=13110
Score = 104 bits (114), Expect = 2e-17
Identities = 117/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
||| || || |||||||| || | || || ||||||||||| ||||| |||||||||||
Sbjct 2101 GTCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTT 2160
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
|| ||||| ||||| | | |||| |||||| ||||||||||| | ||||
Sbjct 2161 ATCCTGAATCTTCTGCTTCACATTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGAT 2220
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661
|| ||||| |||| || || || || |||||||||
Sbjct 2221 CGTCTTGCCTGTCAACGTCTTCACAAAGATCTGCATG 2257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483364705058920
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