Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq179 181 3e-40 >seq179 Length=46302 Score = 181 bits (200), Expect = 3e-40 Identities = 574/872 (66%), Gaps = 21/872 (2%) Strand=Plus/Minus Query 110300 TGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGAT 110359 |||||||||||| || ||||| || ||||| | |||||| |||| ||||| || | | Sbjct 22358 TGACTATTTTGGGTTTAAAACCCTCGAACGAGGTTATTTGTTTCGGGTCAACGGTAAAGT 22299 Query 110360 CATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATAT 110419 | | ||||| || ||||| ||| || | || || |||||||| || ||| ||| || || Sbjct 22298 CGTCGAACGGCCGCAACAGATGATTTTACGAGTCGCGATTGGCATCCATAAACAGGACAT 22239 Query 110420 TAAAGCTGTTATTGAATGTTATGATGTATTAA-GT--AAAAAGAAAGCTATTCATGCTAC 110476 || |||| | ||| ||||| ||||| || | ||| || ||||| || Sbjct 22238 TATCGCTGCGTTGGAAACATATGA---ATTAATGTCGCAGAAGTTTTTTACCCATGCGAC 22182 Query 110477 TCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGG 110536 || || || ||||| || || || | | |||||| |||| |||||| | | | Sbjct 22181 CCCGACGCTGTTTAATGCCGGTACCCCTCGCCCCCAATTGTCTTCGTGCTTTTTATTGGC 22122 Query 110537 AATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTC 110596 || || |||||||| |||||||| || |||||| | | ||| || ||| ||||| Sbjct 22121 TATGAAAGATGATTCCATTGAAGGAATCTATGATACCTTGAAACAATGTGCGTGCATTTC 22062 Query 110597 TAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTC-GCTCAAAAGGAGCAAATA 110655 ||| | ||||| ||||| ||| | || |||| | | || | ||| | | Sbjct 22061 GAAATGGGCAGGAGGGATTGGCATTAGTATGCACAATATCCGGGCCACGAATAGC-TACA 22003 Query 110656 TCGCAACAGCGAAGGGTGCTTC-AACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGAC 110714 || | | || || |||| ||| ||| || | || ||| | | || || || ||| Sbjct 22002 TCCGAGGCACTAATGGCTCTTCGAACGGGA-TTATCCCCATGCTTCGCGTGTTTAATGAC 21944 Query 110715 ACTGCAAAATATGTGAATCAAGGT---GGTAAGAGAAATGGCTCATTTGCTATCTATCTC 110771 || ||| ||| ||| |||||||| || || | || || || ||||| ||||| | Sbjct 21943 ACGGCACGATACGTGGATCAAGGTGGCGGCAAACGCAAAGGATCGTTTGCGATCTACTTG 21884 Query 110772 GAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAA 110831 ||||| ||||| |||| | ||||| || | || | || |||||||| || |||| Sbjct 21883 GAACCGTGGCACGCAGACGTGTTTGAGTTTCTCGATTTGCGGAAAAATCATGGCAATGAA 21824 Query 110832 GAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGT 110891 || | || || || || || | ||| ||||| | | ||| ||||||||||||| Sbjct 21823 CTCCATCGGGCGCGGGACTTGTTCTTTGCGTTGTGGGTACCCGATCTATTCATGAAACGG 21764 Query 110892 GTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGAT 110951 || ||| |||||| | |||| | | | ||||| || |||| || || | || Sbjct 21763 GTGGAAGCAAATGGTAAGTGGAGTTTGTTCTGTCCAAATGAAGCTCCAGGGCTGTACGA- 21705 Query 110952 GTA-TATGGAAAAGAGTTTGAAGACCTT-TACGAAAAATATGAAAAAGAAGG-CAAGTTT 111008 ||| | || | ||||||| |||| || || ||||| || ||| |||| || | | Sbjct 21704 GTACTGGGGCGACGAGTTTG-AGACTTTGTATGAAAAGTACGAACAAGAGGGACGGGCGA 21646 Query 111009 CGCAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAAC 111067 | | || | || | || || | || ||||| ||| | || | || ||||||| Sbjct 21645 GGAAGACGA--TCAATGCCCAGCAGCTGTGGTTTGCGATCTTGGATGCGCAGATTGAAAC 21588 Query 111068 TGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTT 111127 ||| || | ||| | ||||| ||| | || |||||||| || || ||| | Sbjct 21587 GGGAGTGCCCTTTATGCTCTATAAGGATGCAGTGAACCGCAAATCGAACCAGCAGAACCT 21528 Query 111128 AGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 || || || ||| ||||| |||||||||| Sbjct 21527 TGGCACGATCCGGTCCAGTAACTTGTGCTGTG 21496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186671642339963