Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq6744 342 1e-89 >seq6744 Length=1221 Score = 342 bits (378), Expect = 1e-89 Identities = 495/687 (72%), Gaps = 19/687 (3%) Strand=Plus/Plus Query 18009 GCGCTTGTCGATGCCCTGGTAGCCGGCATCGCCGAATACGTCGGCCTCCTTACCGTGCAC 18068 ||| ||||| |||||| || || ||||| || | || | ||||| ||| |||| Sbjct 117 GCGTTTGTCTGCGCCCTGATACCCAGCATCACCATAGGCGCTGCTCTCCTGACCATGCAG 176 Query 18069 CAACGCATGCGCTTGCGTCACGTCGTTGACGTTGGCGGCCGTGCCCAGCACGGTATGCAC 18128 || ||| | || | ||||| |||||||||||| | |||||||| |||| || ||||| Sbjct 177 CAGCGCGTTGGCCTCGGTCACATCGTTGACGTTGCCCGCCGTGCCGCGCACCGTGTGCAC 236 Query 18129 CAGCCCCGAGTCCGCATCCACGCCAATGTGCGCTTTCATTCCGAAATGCCACTGGTTACC 18188 ||| ||||| | || ||||| || || || || ||||| ||||||| |||||| | || Sbjct 237 CAGACCCGATTGAGCGTCCACACCGATATGGGCCTTCATGCCGAAATACCACTGTTGGCC 296 Query 18189 TTTCTTGGTCTGGTGCATCTCGGGGTCGCGCTTGCCGCTGCCATTCTTGGTCGAGCTGGG 18248 |||||| |||| |||||||||||||| |||| ||||||| | ||||||||||||||||| Sbjct 297 CTTCTTGCTCTGATGCATCTCGGGGTCACGCTGGCCGCTGGCGTTCTTGGTCGAGCTGGG 356 Query 18249 CGCGGCAATCAGCGAGGCGTCGACCACCGTGCC-CTCTTTGAGCAGGTAGCCCTTCGCAC 18307 ||| || ||||||| ||| || ||||||||||| ||| |||||| | |||||| || | Sbjct 357 CGCAGCGATCAGCGTGGCATCCACCACCGTGCCACTC-TTGAGCTGCAGGCCCTTGGC-C 414 Query 18308 TG-AGTTGCGCGTTGACCGTCTGCAGAAATTGCTCGGCCAGTTGGTGTCGCTCCAGCAAG 18366 || | |||||||||| ||||| || | | ||||| | ||| ||||||||| Sbjct 415 TGCAACAGCGCGTTGACGGTCTGAAGGATCAGTGGCGCCAGCTTGTGCTGCTCCAGCACA 474 Query 18367 TGCCGAAAGCGCAGAATGCTGACCCGGTCCGGCA----GTCGGCTTATGCCTCCCAGCCC 18422 || ||||| || |||||| || | ||| |||| ||||| | ||| | || || Sbjct 475 TGGCGAAACCGAAGAATGGTGCTCTCGTCGGGCAACCGCTCGGCCCA-GCCCTCAAGGCC 533 Query 18423 CGCGAATTGCCGATACAACGGCACGTCGTACAGCGCCTCTTCCATCGCCACGTCCGTCAG 18482 ||||| | ||| ||| |||||| |||| ||| || |||||||||||| ||||| || Sbjct 534 GGCGAACTCACGAAACAGCGGCACATCGTGCAGGGCTTCTTCCATCGCCGGGTCCGAGAG 593 Query 18483 CCCGAACCATTGCTGCAGAAAGTGGATGCGCAGCATCGTTTCGACTGGAAACGGCTTCCG 18542 |||||| || |||| || || ||||||| ||| | ||| || || || || Sbjct 594 GTTGAACCACTGTTGCATGAAATGAATGCGCAACATGGCCTCGGGTGCGAAGGGTGGGCG 653 Query 18543 ACC-CGTC-GCCTTGACCGGCGCATGCGGCGCTATCAACGCCAAAAACGCCTGCCACGGC 18600 ||| |||| ||||| | ||| | |||| | ||| |||| | | ||| ||| Sbjct 654 ACCTCGTCTGCCTT--CGGGCAAGTAAGGCGAGACCAATGCCACCAGATCAGACCAAGGC 711 Query 18601 ACCACACGTTCCATCTCATCCAGAAATACCTGCTTGCGCGTGCGTCGGTTGC---TCAGG 18657 ||||| || ||||||||||| ||||| | || |||||||||| |||| ||| Sbjct 712 ACCACGCGCTCCATCTCATCGAGAAACTCGCGCCGGCGCGTGCGT---TTGCCTGTCATC 768 Query 18658 TCCAGGCCAAGGTCGCTTTGTTTCATG 18684 ||||||| || || ||| |||||| Sbjct 769 CCCAGGCCCAGTCCGTGTTGCTTCATG 795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127870702539144