Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_025452.1 Length=155346 Score E Sequences producing significant alignments: (Bits) Value seq2003 143 3e-29 >seq2003 Length=7520 Score = 143 bits (158), Expect = 3e-29 Identities = 347/515 (67%), Gaps = 18/515 (3%) Strand=Plus/Minus Query 26774 AACTTGTCAACGTCGGCGAAGTAAGCCTCGTACATGTCAGGATTGTCTTTCGGGTCGAAC 26833 |||| ||| |||||| ||| | || ||||||| | |||| | || | ||| ||| Sbjct 7188 AACTCGTCCTGGTCGGCAAAGAAGGCATCGTACAAGCCAGGGATATCATGCGGTGAAAAC 7129 Query 26834 AGATACAGAGGCTG---CTTGGCAACCAGGCGCTCAAACATCACGCGGTTGATCTGAATA 26890 ||| | ||| |||| | |||||||| |||||| |||||||||||| | Sbjct 7128 AGAGTGATGTTCTGGCCCTTG---ATCAGGCGCTGGTACATCAGGCGGTTGATCTGCACG 7072 Query 26891 CCGTAGTCGATGCGACGTTCGCGGTTCTCTTCTGTTCCACGGTTGTTCTTCAGGACAACG 26950 || || |||| |||| | ||||| |||||| || |||||||| ||||| || | Sbjct 7071 CCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTTTTCAGCACCAGC 7012 Query 26951 ACGTCATCGAACTGGTAG-TGCCACAGAGGGATGTACCCTGTCGCTGCACCGCCGCGAAT 27009 | || || ||| || ||||||| ||| | || ||||| || || || || | Sbjct 7011 A-GTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCCCCACCCCGCAC 6953 Query 27010 GCCGCCCTGAGAGCACGACTTGAGCGCCCCAGTGAGATACTTGAT-GAACGGGATCAGGC 27068 |||||||| ||||| || || | ||| | || | | || | |||||| ||||| Sbjct 6952 ACCGCCCTGCGAGCAGGATTTCACCGCAG-ACTGGAACAGTTTGTAGAACGG---CAGGC 6897 Query 27069 ---CTGTATGAACCATCTCTCCGCCGCGAATAGGACTACCAATACCACGGATT-GCCCCG 27124 | ||||| | || ||||| || || || || | | ||||| | |||| Sbjct 6896 AACCGGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCCCAGCGCGCGGATGCGGCCCG 6837 Query 27125 AAGTCAAAACCGATACCAGCGCGTTTGGACACATAGTCAACGATGGTCTTGGCCGTTGCG 27184 || | || || || ||||||| || ||||| | ||||| | ||| ||||| Sbjct 6836 C-GTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGATCGCGCTGGTGGTTGCA 6778 Query 27185 TTGATAGAGTCCAGGGTGTCACCAGTCTTGATCAACACACATGAGCTGAACTGACGGGTA 27244 ||||| ||||||| ||||| || || ||||| || || ||||||||||| || ||| Sbjct 6777 TTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAACTGGCGCGTA 6718 Query 27245 GGAGTACGAACACCGGCCATGATCGGGGTTGGAAG 27279 |||||||| |||||||||||||| || || || || Sbjct 6717 GGAGTACGCACACCGGCCATGATAGGCGTAGGCAG 6683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496921531776080