Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_025452.1
Length=155346
Score E
Sequences producing significant alignments: (Bits) Value
seq2003 143 3e-29
>seq2003
Length=7520
Score = 143 bits (158), Expect = 3e-29
Identities = 347/515 (67%), Gaps = 18/515 (3%)
Strand=Plus/Minus
Query 26774 AACTTGTCAACGTCGGCGAAGTAAGCCTCGTACATGTCAGGATTGTCTTTCGGGTCGAAC 26833
|||| ||| |||||| ||| | || ||||||| | |||| | || | ||| |||
Sbjct 7188 AACTCGTCCTGGTCGGCAAAGAAGGCATCGTACAAGCCAGGGATATCATGCGGTGAAAAC 7129
Query 26834 AGATACAGAGGCTG---CTTGGCAACCAGGCGCTCAAACATCACGCGGTTGATCTGAATA 26890
||| | ||| |||| | |||||||| |||||| |||||||||||| |
Sbjct 7128 AGAGTGATGTTCTGGCCCTTG---ATCAGGCGCTGGTACATCAGGCGGTTGATCTGCACG 7072
Query 26891 CCGTAGTCGATGCGACGTTCGCGGTTCTCTTCTGTTCCACGGTTGTTCTTCAGGACAACG 26950
|| || |||| |||| | ||||| |||||| || |||||||| ||||| || |
Sbjct 7071 CCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTTTTCAGCACCAGC 7012
Query 26951 ACGTCATCGAACTGGTAG-TGCCACAGAGGGATGTACCCTGTCGCTGCACCGCCGCGAAT 27009
| || || ||| || ||||||| ||| | || ||||| || || || || |
Sbjct 7011 A-GTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCCCCACCCCGCAC 6953
Query 27010 GCCGCCCTGAGAGCACGACTTGAGCGCCCCAGTGAGATACTTGAT-GAACGGGATCAGGC 27068
|||||||| ||||| || || | ||| | || | | || | |||||| |||||
Sbjct 6952 ACCGCCCTGCGAGCAGGATTTCACCGCAG-ACTGGAACAGTTTGTAGAACGG---CAGGC 6897
Query 27069 ---CTGTATGAACCATCTCTCCGCCGCGAATAGGACTACCAATACCACGGATT-GCCCCG 27124
| ||||| | || ||||| || || || || | | ||||| | ||||
Sbjct 6896 AACCGGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCCCAGCGCGCGGATGCGGCCCG 6837
Query 27125 AAGTCAAAACCGATACCAGCGCGTTTGGACACATAGTCAACGATGGTCTTGGCCGTTGCG 27184
|| | || || || ||||||| || ||||| | ||||| | ||| |||||
Sbjct 6836 C-GTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGATCGCGCTGGTGGTTGCA 6778
Query 27185 TTGATAGAGTCCAGGGTGTCACCAGTCTTGATCAACACACATGAGCTGAACTGACGGGTA 27244
||||| ||||||| ||||| || || ||||| || || ||||||||||| || |||
Sbjct 6777 TTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAACTGGCGCGTA 6718
Query 27245 GGAGTACGAACACCGGCCATGATCGGGGTTGGAAG 27279
|||||||| |||||||||||||| || || || ||
Sbjct 6717 GGAGTACGCACACCGGCCATGATAGGCGTAGGCAG 6683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496921531776080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |