Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq315 98.7 9e-16
seq1314 95.1 1e-14
seq69 95.1 1e-14
>seq315
Length=59289
Score = 98.7 bits (108), Expect = 9e-16
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|| || || || |||||||||||||||| ||||| ||||| ||||| || |||| |
Sbjct 38602 GATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCA 38661
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || ||||| || || || || ||||| || || || || || || ||||
Sbjct 38662 AAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACA 38721
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | | || | ||||||||| || | ||| | ||| || || |||| || ||
Sbjct 38722 TTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTC 38781
Query 132110 ATGAAAATCTGCAT 132123
| ||||||||||||
Sbjct 38782 ACGAAAATCTGCAT 38795
Score = 95.1 bits (104), Expect = 1e-14
Identities = 138/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || ||||| ||||| |||| ||||| ||||| ||||| || |||| |
Sbjct 38299 GACTCCTTCTGGATGTTATAGTCACTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCA 38358
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || ||||| || || || || ||||| || || || || || || ||||
Sbjct 38359 AAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACA 38418
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | | || | ||||||||| || | ||| | ||| || || |||| || ||
Sbjct 38419 TTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTC 38478
Query 132110 ATGAAAATCTGCATG 132124
| |||||||||||||
Sbjct 38479 ACGAAAATCTGCATG 38493
>seq1314
Length=13110
Score = 95.1 bits (104), Expect = 1e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 131936 TTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATT 131995
||||| ||||||||||| | || || ||||| || || || |||| | ||||
Sbjct 2069 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2128
Query 131996 AGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCC 132055
|||||||| || || ||||| |||||||| ||||| ||| || || |||| | ||
Sbjct 2129 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTGTCA 2188
Query 132056 ACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAA 132115
| | |||| ||||||||| || | ||| | ||| || || |||| || || | ||
Sbjct 2189 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAAAG 2248
Query 132116 ATCTGCATGA 132125
||||||||||
Sbjct 2249 ATCTGCATGA 2258
>seq69
Length=63067
Score = 95.1 bits (104), Expect = 1e-14
Identities = 294/451 (65%), Gaps = 13/451 (3%)
Strand=Plus/Plus
Query 46824 GCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCA-GTTTTGC 46882
|| ||||| || ||||||| || ||||||||| | || || |||||| ||| |||
Sbjct 12950 GCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGC 13009
Query 46883 CGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTT 46942
| || |||| | || | || | ||||| ||||| | ||| |||||| |
Sbjct 13010 T-CGATCTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCT 13068
Query 46943 GATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGT 47002
|| || || || || | ||||||||||||||||| ||| ||| | || ||
Sbjct 13069 CATTAGTCGAGATGAGGGCATGCACACGGACTTTGCGTGCCTCATGTACTCCAAGCTAGT 13128
Query 47003 GAATGAGAAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGA 47062
||| || | | |||| ||| | || || | || || |||| |||||
Sbjct 13129 GAACAAGC---TGCCCGAGGACCGCGTCCACACGATCATTCGCGACGCAGTGACGATCGA 13185
Query 47063 AAAGGAGTTTTTTACTGCGG----CGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGT 47118
| |||||| | |||| |||||||||| | || | ||||||||| | |
Sbjct 13186 GCACGAGTTTGT----GCGGGACTCGCTGCCCGTTGAGCTGATTGGCATGAACTCGGCGC 13241
Query 47119 CTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGA 47178
|||||| | || ||||||||||| ||||| || |||||| |||||| |||
Sbjct 13242 TCATGTGCCAGTACATTGAGTTTGTAGCGGACCGCCTGTTGTACTCGCTCGGCGTGTCGA 13301
Query 47179 AATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAA 47238
| ||| |||| || || ||||| | ||| ||| || ||||| ||||||| |
Sbjct 13302 AGATTTTCCATGCAAAGAACCCATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGA 13361
Query 47239 CCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269
| || ||||||||||| || || || |||||
Sbjct 13362 CGAACTTTTTCGAGAAGCGTGTGGGCGAGTA 13392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476555895227880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |