Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq315 98.7 9e-16 seq1314 95.1 1e-14 seq69 95.1 1e-14 >seq315 Length=59289 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||||||||||| ||||| ||||| ||||| || |||| | Sbjct 38602 GATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCA 38661 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || || || || |||| Sbjct 38662 AAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACA 38721 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || |||| || || Sbjct 38722 TTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTC 38781 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 38782 ACGAAAATCTGCAT 38795 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||| ||||| |||| ||||| ||||| ||||| || |||| | Sbjct 38299 GACTCCTTCTGGATGTTATAGTCACTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCA 38358 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || || || || |||| Sbjct 38359 AAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACA 38418 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || |||| || || Sbjct 38419 TTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTC 38478 Query 132110 ATGAAAATCTGCATG 132124 | ||||||||||||| Sbjct 38479 ACGAAAATCTGCATG 38493 >seq1314 Length=13110 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131936 TTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATT 131995 ||||| ||||||||||| | || || ||||| || || || |||| | |||| Sbjct 2069 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2128 Query 131996 AGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCC 132055 |||||||| || || ||||| |||||||| ||||| ||| || || |||| | || Sbjct 2129 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTGTCA 2188 Query 132056 ACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAA 132115 | | |||| ||||||||| || | ||| | ||| || || |||| || || | || Sbjct 2189 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAAAG 2248 Query 132116 ATCTGCATGA 132125 |||||||||| Sbjct 2249 ATCTGCATGA 2258 >seq69 Length=63067 Score = 95.1 bits (104), Expect = 1e-14 Identities = 294/451 (65%), Gaps = 13/451 (3%) Strand=Plus/Plus Query 46824 GCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCA-GTTTTGC 46882 || ||||| || ||||||| || ||||||||| | || || |||||| ||| ||| Sbjct 12950 GCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGC 13009 Query 46883 CGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTT 46942 | || |||| | || | || | ||||| ||||| | ||| |||||| | Sbjct 13010 T-CGATCTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCT 13068 Query 46943 GATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGT 47002 || || || || || | ||||||||||||||||| ||| ||| | || || Sbjct 13069 CATTAGTCGAGATGAGGGCATGCACACGGACTTTGCGTGCCTCATGTACTCCAAGCTAGT 13128 Query 47003 GAATGAGAAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGA 47062 ||| || | | |||| ||| | || || | || || |||| ||||| Sbjct 13129 GAACAAGC---TGCCCGAGGACCGCGTCCACACGATCATTCGCGACGCAGTGACGATCGA 13185 Query 47063 AAAGGAGTTTTTTACTGCGG----CGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGT 47118 | |||||| | |||| |||||||||| | || | ||||||||| | | Sbjct 13186 GCACGAGTTTGT----GCGGGACTCGCTGCCCGTTGAGCTGATTGGCATGAACTCGGCGC 13241 Query 47119 CTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGA 47178 |||||| | || ||||||||||| ||||| || |||||| |||||| ||| Sbjct 13242 TCATGTGCCAGTACATTGAGTTTGTAGCGGACCGCCTGTTGTACTCGCTCGGCGTGTCGA 13301 Query 47179 AATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAA 47238 | ||| |||| || || ||||| | ||| ||| || ||||| ||||||| | Sbjct 13302 AGATTTTCCATGCAAAGAACCCATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGA 13361 Query 47239 CCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 | || ||||||||||| || || || ||||| Sbjct 13362 CGAACTTTTTCGAGAAGCGTGTGGGCGAGTA 13392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476555895227880