Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq478 210 3e-49 >seq478 Length=29740 Score = 210 bits (232), Expect = 3e-49 Identities = 452/660 (68%), Gaps = 17/660 (3%) Strand=Plus/Minus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || || ||||||||||| || || || |||||||| || | | || | ||| || || Sbjct 15630 AGCGGTTCCACGTGGTTCAGATACACATGCGCGTCACCAATGACATGAATAAACTCGCCG 15571 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTG 147039 || || | || | ||| || ||||| | | || ||||||| ||||||||| || ||| Sbjct 15570 GGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCGTAGCTGGCGATATTG 15511 Query 147040 AAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099 || ||||| || || |||||||| | || | |||||||| ||||||||| | ||| ||| Sbjct 15510 AATGGGACGCCGAGCCCCATGTCAGCTGAGCGCTGGTACATCTGGCACGACAACTCACCG 15451 Query 147100 TCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCC 147159 || || ||||||||||| || | |||||||||||||||||||||||| | || || Sbjct 15450 TCAGCTACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCCATGTCATTAAGATCA 15391 Query 147160 GCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTC-TCGGGGTTCCTCTTAATCTCTTC 147218 || || ||||||||||| | ||| | || | | || ||||| || | | | Sbjct 15390 GCCGGATTCCAGGCCGACAGCACGATACGGC-GATCAGAAGGGTTTGTCCGGAGTTTGTG 15332 Query 147219 GATAACC-CACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACG 147276 || ||| || | |||||||||||||| ||||| ||| | | | ||| ||| | Sbjct 15331 TATCACCTCAGC-GAGCTGGTCCACGCCTTGGCCTGTATAG-TCGGCATGCATGTCGGTG 15274 Query 147277 TACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTT 147336 ||| | || || || || | ||||||||| || || ||||| || ||||| || | | Sbjct 15273 TACTTTGCACCGAAATGACGCCACTGGAAACCATATACTGGTCCAAGGTCTCC-TACCTC 15215 Query 147337 CTGTG-CGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCC 147395 | ||| | ||||| | | || |||| | || || | | |||||||||| | Sbjct 15214 CCGTGACTGTAAGCCTCTACTGTCCAGGTACTCACGCGATCCATTGCCGTCCCAGATACG 15155 Query 147396 CACTCC-CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCT 147454 || || || || | ||| | | |||| ||| |||||||| ||||||| Sbjct 15154 GACACCTTTTTGCTG-TAGCGTGTGTGCACTCGTGTCACCCTTAATGAACCACAGCAGCT 15096 Query 147455 CCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGTCCC 147511 |||| || || | ||| || || | ||| || ||||||| || ||| | || || Sbjct 15095 CCTCAGCCACACCTCGCCAGAACACGCGCTTCGTCGTCAGCAACGGAAACGCGTTGTTCC 15036 Query 147512 TCAGCGAATACCTCGC--CTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTC 147569 ||| | || |||| ||| | |||||||| |||| ||| |||||||| || | ||| Sbjct 15035 TCA--AACTAAATCGCATCTGCGCTCCAAACACTGACAACGTCCCCGTGCCGGTTCGGTC 14978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583420293511200