Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq69 268 1e-65 seq314 176 6e-38 seq179 131 2e-24 seq334 116 5e-20 seq77 114 2e-19 >seq69 Length=63067 Score = 268 bits (296), Expect = 1e-65 Identities = 417/585 (71%), Gaps = 22/585 (4%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| ||||||||||| || || || |||| | || | ||| | |||||| || Sbjct 12512 AACCCCAACCGCTTTGTGCTCTTTCCGATCCAAGAGCACGACGTGTGGCAGATGTAC-AA 12570 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGC-CGA---CACGG 1455849 ||||| || || || || ||||| || |||||| | ||| | || || ||| || || Sbjct 12571 GAAGGCGGAAGCTTCGTTCTGGACTGCTGAGGAGCTAGACTT-GGTGCACGATCTCAAGG 12629 Query 1455850 TCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTT 1455909 |||||| | || | ||| | ||||| || || |||||||| || |||||||| | Sbjct 12630 ---ACTGGGCGAACCTCACGGACAATGAGCGTCACTTTATCAAGCATGTGCTCGCCTTCT 12686 Query 1455910 TTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTC 1455969 || || ||||| |||||||| ||| |||||| |||||| ||||| || || || Sbjct 12687 TT-GCAGCCAGTGATGGCATTGTGAACGAGAATCTGGCCATGAACTTTAGCAATGAAGTG 12745 Query 1455970 CAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCT 1456029 ||| |||| || || || | ||||| || ||||||||||| || |||||||||||||| Sbjct 12746 CAAGTGCCGGAAGCTCGGTGCTTTTATGGCTTCCAGATCGCGATTGAAAACATCCACTCG 12805 Query 1456030 GAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTC 1456089 ||| ||| ||||| || || ||||| ||| | || || || |||||||| ||||| Sbjct 12806 GAAGTCTATTCGCTGCTCATTGACACGTACATTAAAGAGGCGACGGAGAAGGATCACCTT 12865 Query 1456090 TTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTG- 1456148 | ||||| || || || | |||| || | || || ||| | |||||| | ||||| Sbjct 12866 CTGCGCGCGATTGAGACCATCCCGTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAGTGG 12925 Query 1456149 ---GATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTC 1456204 || | ||||| | | ||| | || |||||||| | | |||||| | ||| Sbjct 12926 TGCGACCCACAAGTA--TCTTCG----TACGCGGAGCGGCTGCTGGCATTTGCCTCGGTC 12979 Query 1456205 GAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTC 1456264 || ||||| || ||||||||| |||||| | ||||||||||| ||||||||||| ||| Sbjct 12980 GAAGGCATTTTCTTCTCGGGCTCGTTCTGCTCGATCTTTTGGCTGAAGAAGCGCGGTCTC 13039 Query 1456265 ATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||| || | || |||| ||||| | || ||||| || || Sbjct 13040 ATGCCTGG-CCTCAGCTTCTCGAACGAGCTCATTAGTCGAGATGA 13083 Score = 152 bits (168), Expect = 7e-31 Identities = 234/326 (72%), Gaps = 12/326 (4%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTC----GACC 1456507 ||||| |||||||| || || | ||| | | ||| || ||||||| | | |||| Sbjct 13089 TGCACACGGACTTTGCGTGCCTCATGTACTCCAAGCTAGTGAACAAGCTGCCCGAGGACC 13148 Query 1456508 GACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAG 1456567 | ||| | || | ||||| ||| || || ||||||| | |||||||| | || Sbjct 13149 G-CGTCCACACG---ATCATTCGCGACGCAGTGACGATCGAGCACGAGTTTGTGCGGGAC 13204 Query 1456568 TCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATT 1456627 |||||||| || | ||| || ||||||||| | | ||||||||||||||||||||| || Sbjct 13205 TCGCTGCCCGTTGAGCTGATTGGCATGAACTCGGC-GCTCATGTGCCAGTACATTGAGTT 13263 Query 1456628 TTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAAC 1456687 | || || ||||||||| | |||||||| | | |||| | || | ||| Sbjct 13264 T-GTAGCGGACCGCCTGTTGTACTCGCTCGGC-GTGTCGAAGATTTTCCATGCAAAGAAC 13321 Query 1456688 CCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGC 1456747 || || |||||||| |||||||||| |||||||||| |||||||||||| || Sbjct 13322 CCATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGACGAACTTTTTCGAGAAGCGT 13381 Query 1456748 GT-GGCGAGTACGCCAAGGCCGGCGT 1456772 || ||||||||| ||||||| || || Sbjct 13382 GTGGGCGAGTACTCCAAGGCTGGTGT 13407 >seq314 Length=49253 Score = 176 bits (194), Expect = 6e-38 Identities = 329/481 (68%), Gaps = 7/481 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAG 332932 |||||||| |||||||| || ||||| | || ||| ||||| | | ||| ||||||| Sbjct 42932 AAGCGCAGCATGGCACAGCGACTCTGAATGGGCTCAATGACTTTCGTCGAGTTGTTGCAC 42991 Query 332933 GCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGG 332992 || || || || ||||| ||| | ||||| ||| || || ||||| || Sbjct 42992 GCGAGAGCGAAGCGCGTGGTAGCAGAGAAGAGCTCCATCGTCCGTCGAAGTGCCTGCTGA 43051 Query 332993 GCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGC 333052 || || | ||| | | ||| ||||||||||| || | || |||||||||||| |||| Sbjct 43052 GCTGCAGCCGTCATGGCGTCCGCCTCGTCGAGAATCACGAGCTTGTGGCGCCCTGGCGGG 43111 Query 333053 AGATCAACCCTTTTCGAGGCGTGGTGTT--TGATGATCTTGCGCACGACGTCCACGCCGC 333110 || | | |||| | ||| | | |||| || | || || ||| | || | Sbjct 43112 AG--CGTCACTTTCTGCTGCGCGAACATCTTGATCTTCGTCCGGACCGTGTCGATCCCAC 43169 Query 333111 GCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCG---GCCGCACCCAAGAGGA 333167 |||||||||||||||| || || |||||||||| | | | | || || ||||| Sbjct 43170 GCTCGTCCGACGCGTTCAGCTCCAGCACGGCCTGTTTGACATACGTCGGGCCTAAGAGCT 43229 Query 333168 CGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGA 333227 || |||| || ||| ||| ||||||||||||||||| || ||||| || || || | | Sbjct 43230 CGTGCGCGAGACACAAGATACTCGTGGTCTTGCCCGTTCCCGGCGGCCCGGCGAGGATCA 43289 Query 333228 GGTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTTGC 333287 ||||| |||||||||| || |||| |||| ||| || | | || ||||| Sbjct 43290 AGTTGGTCATGTTGCCGGCGCGCGCCATGGCCTGGAGACTCGCGATCGTGTTGCGGTTGC 43349 Query 333288 CGACAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGGGAGGCCAAAGTCGG 333347 | || | |||| | | || ||| ||||||||||| | ||| || ||||||||| Sbjct 43350 CCACGACGTCGGCCAAGACGCGTGGACGGTACTTTTCCACCCACGGCGCTTCAAAGTCGG 43409 Query 333348 C 333348 | Sbjct 43410 C 43410 >seq179 Length=46302 Score = 131 bits (144), Expect = 2e-24 Identities = 201/287 (70%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 259895 ATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGC 259954 ||||||||| |||| || ||| ||||| || ||||| ||||||||||| || || ||| Sbjct 22210 ATGTCGCAGAAGTTTTTTACCCATGCGACCCCGACGCTGTTTAATGCCGGTACCCCTCGC 22151 Query 259955 CCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTAT 260014 || || || ||||||||| | |||| ||||| | ||||| || || || |||||| Sbjct 22150 CCCCAATTGTCTTCGTGCTTTTTATTGGCTATGAAAGATGATTCCATTGAAGGAATCTAT 22091 Query 260015 GACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA 260074 || || | || || || ||| ||| || || ||| || || || || || Sbjct 22090 GATACCTTGAAACAATGTGCGTGCATTTCGAAATGGGCAGGAGGGATTGGCATTAGTATG 22031 Query 260075 CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTT 260134 ||||| | || ||| || |||| | ||||| || ||| || ||||| || Sbjct 22030 CACAATATCCGGGCCACGAATAGCTACATCCGAGGCACTAATGGCTCTTCGAACGGGATT 21971 Query 260135 GTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 | |||||||||||||| ||||| |||||||| || ||||| || || Sbjct 21970 ATCCCCATGCTTCGCGTGTTTAATGACACGGCACGATACGTGGATCA 21924 Score = 102 bits (112), Expect = 1e-15 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972 || ||||| | |||||||| |||||||||||| ||||| ||||| ||||| | |||| Sbjct 21018 AGTATGGCATTCGCAACTCTCTGCTCGTGGCGCCAATGCCGACGGCTTCGACGGCCCAGA 20959 Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGC 263032 | |||||||||| |||| || | ||| |||| || || |||| |||||||||| Sbjct 20958 TTCTGGGCAACAACGAGTCGATTGAGCCGTACACGTCGAATATGTACAACCGCCGCGTGC 20899 Query 263033 TCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCC 263092 | | ||||| ||||| | || ||| ||||| | ||| || | | | ||| Sbjct 20898 TGGCTGGCGAGTTTACGATTGTAAACAAGTACCTGATGAAGGAATTGATTGACCTGGGCA 20839 Query 263093 TGTGGACGCCCGACTTTCGCGACC 263116 | ||||||||||| | ||| ||| Sbjct 20838 TCTGGACGCCCGAAGTCCGCAACC 20815 >seq334 Length=35171 Score = 116 bits (128), Expect = 5e-20 Identities = 176/247 (71%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| | | |||||||||||||| || |||||||| || || || Sbjct 24025 TCGTACTCGACGTACATCTACAAGGTGCTGCGTCAAGTGCACCCGGAGAC-----GGGCA 24079 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || | | | | | |||||||||||||||||||| |||| ||||| |||| |||||| Sbjct 24080 TCAGCAAGCGCGGC-ATGTCGATCATGAACTCGTTCATCAATGACATCTTCGAGCGCATC 24138 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG--CGCAACACGATCGGCACGCGCG 725073 | | | ||||| || || |||||| ||||||| | || | ||| | || | Sbjct 24139 GCCTCGGAGGCGGGCAAGCTCTCGCGCTACAACAAGAAGTCGACGCTGTCG--AGTCGTG 24196 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 |||||||||| |||||||| ||||| | | || || ||||||| |||||| || || | Sbjct 24197 AGATCCAGACGGCCGTGCGTCTGATGCTTCCTGGGGAGCTGGCCAAGCACGCTGTGTCGG 24256 Query 725134 AGGGCAC 725140 | ||||| Sbjct 24257 AAGGCAC 24263 >seq77 Length=94558 Score = 114 bits (126), Expect = 2e-19 Identities = 177/250 (71%), Gaps = 16/250 (6%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| | | |||||||||||||| || |||||||| || || || Sbjct 54510 TCGTACTCGACGTACATCTACAAGGTGCTGCGTCAAGTGCACCCGGAGAC-----GGGCA 54564 Query 724956 TCCTCCAACAAGTCC---ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGC 725012 || | |||| | |||||||||||||||||||| |||| ||||| |||| ||| Sbjct 54565 TC----AGCAAGCGCGGTATGTCGATCATGAACTCGTTCATCAATGACATTTTCGAGCGC 54620 Query 725013 ATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG--CGCAACACGATCGGCACGC 725070 || | | |||||||| || |||||| ||||||| | || | ||| | | Sbjct 54621 ATTGCTTCGGAGGCCGGCAAGCTCTCGCGCTACAACAAGAAGTCGACGCTGTCG--AGCC 54678 Query 725071 GCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCT 725130 | ||||||||||| |||||||| ||||| | | || || ||||||| ||||||||| | Sbjct 54679 GTGAGATCCAGACGGCCGTGCGTCTGATGCTTCCGGGTGAGCTGGCCAAGCACGCCGTGT 54738 Query 725131 CCGAGGGCAC 725140 | || ||||| Sbjct 54739 CGGAAGGCAC 54748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176915837587846