Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq315 141 8e-29 seq1314 138 1e-27 seq633 82.4 7e-11 >seq315 Length=59289 Score = 141 bits (156), Expect = 8e-29 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| ||| || || || |||| ||||||||||| || ||||| Sbjct 38605 TCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAG 38664 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| |||||||||||| | || | || |||||||||| |||||| ||||||| | | Sbjct 38665 ATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTG 38724 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || ||| || ||||| |||| ||||||||| || || ||||| || ||||| Sbjct 38725 TCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACG 38784 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 38785 AAAATCTGCAT 38795 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| || ||||| || || || || || |||| || Sbjct 38283 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCACTCAGCGTACGGCCGTCTTC 38342 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || ||||| |||| |||||||||||| | || | || |||||||||| Sbjct 38343 CAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 38402 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||||| | | | | || ||| || ||||| |||| ||||||||| || Sbjct 38403 GATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTT 38462 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || ||||| || |||||||| Sbjct 38463 CCCTGTCAACGTCTTCACGAAAATCTGCAT 38492 >seq1314 Length=13110 Score = 138 bits (152), Expect = 1e-27 Identities = 153/201 (76%), Gaps = 5/201 (2%) Strand=Plus/Plus Query 35537 AACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTA 35596 ||||||| ||||||| |||||||| || | | || || |||| ||||| ||||| Sbjct 2060 AACGTAC---CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTG 2116 Query 35597 CCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC 35656 || ||||| |||| ||||||||||| | ||||| || ||||| ||| ||||| ||| Sbjct 2117 CCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGC 2176 Query 35657 TTCAGAGTTGCCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAA 35715 |||| | ||| || | ||||| || ||||| |||| ||||||||| || || ||||| Sbjct 2177 TTCACA-TTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAA 2235 Query 35716 AGTTTTCACAAATATCTGCAT 35736 || |||||||| |||||||| Sbjct 2236 CGTCTTCACAAAGATCTGCAT 2256 >seq633 Length=24710 Score = 82.4 bits (90), Expect = 7e-11 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 41175 GATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTCCAC-GT 41233 ||| | |||||| || |||||||| || ||||| || | | || ||||||| | || Sbjct 14788 GATTCTCTCGAGAATGAGCTGCGCTACTCGATCCCCTCGCTTGACGGCAAAGTCTTCCGT 14729 Query 41234 CGTTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGATCGATGACGCCAG 41293 || || ||| | || | | ||||||||| || ||| |||| ||||||||| |||| Sbjct 14728 CGA-GTGGTTGAACAGGAGCACGCCCACGTTACCGCGGTAATCGGCATCGATGACACCAG 14670 Query 41294 CAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGATCCTACCGTAAC 41353 | || ||||||| | ||||| ||| || ||||| || ||||| | | |||| | Sbjct 14669 CGCCAGTGTCGATGAAATTCTTCAGCGCAAGACCCGAGCGAGGCGCCACGCGGGCGTAGC 14610 Query 41354 AATCTTTGGGCAGCTGCAGAG-CAATGTCCGTCTTGATCAG 41393 | | |||| | ||| | ||| ||||||||||| ||| Sbjct 14609 AGCTGTCAGGCA-CAGCAATGGCAAGGTCCGTCTTGACCAG 14570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450741291037640