Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq3915 84.2 3e-11 >seq3915 Length=2367 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/171 (72%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 150510 CTAGACTGGGAAGCTCTACGAGCCGATTGTCTGAAGTATGGAGTCCGTAACTCCACCCTC 150569 || ||||||||| || || ||||| || ||| |||| | |||||||||||||| Sbjct 2016 CTCGACTGGGAAAGCCTGCGCGCCGAGATTCAGAAAGATGGCTTGCGTAACTCCACCCTG 1957 Query 150570 TCGGCACAGATGCCCTCTGAGTCCTCCT--CAG-TCGTCTGTAACGCCACCAACGGTATC 150626 | || | |||||| || ||| | ||| ||| ||| | |||||||||||||||||| Sbjct 1956 ACCGCGCTGATGCCTTCAGAGACGTCCAGCCAGATCGCC---AACGCCACCAACGGTATC 1900 Query 150627 GAACCACCCAGAGGGTTCCTATCGGTGAAGAAGTCCAAGAAGGGAACCCTG 150677 || ||||| | || | | ||||| ||| ||||||| | || | |||| Sbjct 1899 GAGCCACCGCGTGGCCTGGTGTCGGTCAAGCAGTCCAAAGACGGCATCCTG 1849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729844900794040