Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq69 203 4e-47 seq5172 145 1e-29 seq179 100 4e-16 >seq69 Length=63067 Score = 203 bits (224), Expect = 4e-47 Identities = 420/618 (68%), Gaps = 9/618 (1%) Strand=Plus/Minus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | ||| || ||||| || | ||||||||||| |||||| | ||||| || | Sbjct 13115 ACATGAGGCACGCAAAGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGA 13056 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCA 39727 | |||| |||||||| ||||| ||||| || |||||||| || | |||| || || || Sbjct 13055 AGCTGAGGCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAGATCG-AGCAGAACGAGCCC 12997 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 || ||||| |||||||| || | |||||||| | || | ||| ||| || || Sbjct 12996 GAGAAGAAAATGCCTTCGACCGAGGCAAATGCCAGCAGCCGCTCCGCGT-ACGAAGATAC 12938 Query 39788 TTATGTAT----CCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 || || | |||||| | ||||||| |||||||| ||||| || || || || Sbjct 12937 TTGTGGGTCGCACCACTTGAGCGCCCAATTGGCTTTCTTTCGAACACACGGGATGGTCTC 12878 Query 39844 TATAGCATTAAAGAGATAAT-GTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902 || || | || | || || | | || | ||||||| || || || || | || Sbjct 12877 AATCGCGCGCAGAAGGTGATCCTTCTCCGTCGC-CTCTTTAATGTACGTGTCAATGAGCA 12819 Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG 39962 | ||| | ||| || ||||||||||||||||| ||||| || || ||||| || | | Sbjct 12818 GCGAATAGACTTCCGAGTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAG 12759 Query 39963 CTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 |||| | | ||| || || | ||| | |||| ||| || ||||| || |||| Sbjct 12758 CTTCCGGCACTTGCACTTCATTGCTAAAGTTCATGGCCAGATTCTCGTTCACAATGCCAT 12699 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 |||| || ||||| || || | ||||| || ||||| | |||| | || | | Sbjct 12698 CACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGT 12639 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | |||||| |||| ||| | | |||| || ||||| ||||| ||||| || | Sbjct 12638 TCGCCCAGTCCTTGAGATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTT 12579 Query 40143 CTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTAT 40202 | ||||| |||||||| | ||| | || | | ||| || ||||| | ||||| | | Sbjct 12578 CCGCCTTCTTGTACATCTGCCACACGTCGTGCTCTTGGATCGGAAAGAGCACAAAGCGGT 12519 Query 40203 TTGGATTTTTTGCAAGGA 40220 | || || || |||||| Sbjct 12518 TGGGGTTCTTCACAAGGA 12501 >seq5172 Length=1594 Score = 145 bits (160), Expect = 1e-29 Identities = 426/648 (66%), Gaps = 15/648 (2%) Strand=Plus/Plus Query 39316 AACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAA 39375 ||| ||| |||||| || ||| || ||||| || || ||||| |||||||||| || Sbjct 952 AACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAA 1011 Query 39376 TGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAA 39435 ||| || |||||| || ||||| ||||| || | ||| |||| || | Sbjct 1012 TGAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAG 1071 Query 39436 T-TCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCA 39494 | || | | || | || |||||||| || ||||| |||||||| ||| |||| Sbjct 1072 TGTCAGTAG-CAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCA 1130 Query 39495 TTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCT 39554 | || || || || || | || || || | ||| || | ||| || | || || | Sbjct 1131 TACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGT 1190 Query 39555 CTGTTATTATCGATGTTACTACCTCAT-CACTCGGTGGATGCAATAAA---TGTTTAAAC 39610 | | || ||| | || | | || ||| | | |||| || | || Sbjct 1191 CGGCAATAATC----TCACGCAGGCGTTCAGCCGGGAGCTTATTTAAAAGCTGCTGGTAC 1246 Query 39611 ATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAAT 39670 | ||||||||||||||| ||| | ||| ||||| | | || | ||| || ||||| Sbjct 1247 AGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAA 1306 Query 39671 GTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGA 39729 | | || ||||| || ||||||||||| ||||| || |||| |||| ||| | ||||| Sbjct 1307 CTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAATGG-AGCAGAAGCTACCAGA 1365 Query 39730 AAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT 39789 |||||| |||||||| | || ||||| || ||||| | ||| | | | | | || Sbjct 1366 AAAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCAAAGC---TGCCTTT 1422 Query 39790 ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 | ||||| | | ||||| |||||||| | || ||||||| ||||| || || Sbjct 1423 TTCGATCCAGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGC 1482 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 || || || ||||||| | || || ||| ||||| | | ||| || Sbjct 1483 GCGGAACAGGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGCGTA 1542 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACA 39957 |||| ||||||||||| || ||| |||||||| ||||||||||| Sbjct 1543 GGTTTCAGAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590 Score = 96.9 bits (106), Expect = 5e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 70357 TTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTA 70416 ||||| | |||||| || || | | |||||| || |||||||| || || | || Sbjct 436 TTGTGAAGATTTGAAATCGCCAGACGGGCTGCAAGTGAGGCATAGTCGGGGTGACGGGTG 495 Query 70417 GTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTA 70476 || ||| || || ||||| || ||||| | || | ||| || || || || |||| | Sbjct 496 GTCAGAGTGGCGGCAATTTCAGCTGCTAAATTGTCGAGTTCAATGGTAGTGACGCCGTCA 555 Query 70477 TATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATC--TATGAATTCTGTGTTCA 70534 || || |||| |||||||||||||| | | | | ||| || ||| ||| || || | Sbjct 556 TAGAGGCCTTCGATAACTTTCATGGCGACTCTAACAGGGTCAACATG-ATTTTG-GTCGA 613 Query 70535 GACCATAACATAATTTTCTAATACGAGATGTAATTTTATCAAACATAAC 70583 |||||||||| | ||| ||| || || |||||||| || || |||| Sbjct 614 GACCATAACAGAGTTTCTGAATGCGGGAGGTAATTTTGTCGAATTTAAC 662 >seq179 Length=46302 Score = 100 bits (110), Expect = 4e-16 Identities = 410/644 (64%), Gaps = 2/644 (0%) Strand=Plus/Plus Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 || ||| |||||||||||| | ||| |||| | ||| | | || |||||||| Sbjct 21714 CCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATG 21773 Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 ||||||||||| | ||| | || | || | || | | | || |||||| || Sbjct 21774 AATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCA 21833 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 |||||| | |||||||||||| | | || | ||||| ||||| | || ||| Sbjct 21834 TGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATC 21893 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | ||| ||||| || || ||||| | ||||| || |||| |||| | Sbjct 21894 GCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAAC 21953 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 || | ||||| || ||||| || || || ||||| || || || || || Sbjct 21954 ACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATTC 22013 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 | || || ||||| ||| | || || ||||||||| ||| || || ||| Sbjct 22014 GTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGCA 22073 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAAA 69965 || ||||||| || ||||| || || || ||| ||||||| |||| | || || ||| Sbjct 22074 CATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAA-AAA 22132 Query 69966 ACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGT 70025 || ||||| ||| | | || || |||||||| | || || | || || || Sbjct 22133 GCACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGT 22192 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATG 70085 || | || | || | | | |||||||| | || | || ||| | ||| Sbjct 22193 AAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATG 22252 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 || || |||||||| || | | ||| || || || ||||| || |||| || | Sbjct 22253 GATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGAC 22312 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGT 70189 |||| || | ||| || ||||||||||||||||||| Sbjct 22313 CCGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGT 22356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686829092820120