Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_027340.1 Length=162160 Score E Sequences producing significant alignments: (Bits) Value seq2003 150 2e-31 >seq2003 Length=7520 Score = 150 bits (166), Expect = 2e-31 Identities = 291/427 (68%), Gaps = 2/427 (0%) Strand=Plus/Minus Query 58331 GATCAGACGATCCCAGAGCACGCCGTTGATCTGAACACCGTAGTCAGTACGGCGCTCGCG 58390 |||||| || | | | || || ||||||||| || || || || | | ||| | || Sbjct 7108 GATCAGGCGCTGGTACATCAGGCGGTTGATCTGCACGCCATAATCGAGATGACGCACACG 7049 Query 58391 GTTGTTCTCAATACCACGGTTGTTCTTCAGCACGATCATGTCATCGAACTGGAAG-TGCC 58449 ||| | || | || |||||||| |||||||| | || || || ||| ||| |||| Sbjct 7048 GTTTTCTTCTACGCCGCGGTTGTTTTTCAGCACCAGCA-GTGATTCGACTTCAAGGTGCC 6990 Query 58450 ACATCGGGTAATACATGGTTGCTGAGCCGCCACGGATACCACCCTGAGAACAGCTCTTCA 58509 ||| |||||| ||| || || | || || || | ||| ||||| || ||| |||| Sbjct 6989 ACAACGGGTAGAACAACGTCGCCGCCCCACCCCGCACACCGCCCTGCGAGCAGGATTTCA 6930 Query 58510 GATCACCAACGAACTTCTTGATGAACGGGATCGTACCGGTATGAGTCATCTCACCGTCGC 58569 || |||| ||| |||||| | ||||||||| | || ||| | | Sbjct 6929 CCGCAGACTGGAACAGTTTGTAGAACGGCAGGCAACCGGTATGTTGCGCTTCGCCGCCAC 6870 Query 58570 GGATAGAGGAACCCAGGGCACGGATAGCGCCGAAGTCAACACCGATACCAGCACGCTTAG 58629 | || | ||||| || ||||| ||| || || || || || || || | | Sbjct 6869 GTATCTCGCTGCCCAGCGCGCGGATGCGGCCCGCGTTGACGCCTATGCCGGCGCGTTGCG 6810 Query 58630 ACACGTATTTCACGATTGCGGTGCCAGTAGCAGTAATGCTGTCCAGGGTGTCACCAGACT 58689 | || || |||||||| ||| || || ||| | |||||||||||| ||||| || ||| Sbjct 6809 AGACATACTTCACGATCGCGCTGGTGGTTGCATTGATGCTGTCCAGGCTGTCATCACACT 6750 Query 58690 TGATCAGGACACATGAGCTGAACTGACGGGTACGGGTACGCACGCCTGCCATGATAGGTG 58749 |||||| || || ||||||||||| || ||| | |||||||| || ||||||||||| | Sbjct 6749 CGATCAGTACGCAGGAGCTGAACTGGCGCGTAGGAGTACGCACACCGGCCATGATAGGCG 6690 Query 58750 TTGGGAG 58756 | || || Sbjct 6689 TAGGCAG 6683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518723801601600