Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_027344.1 Length=158099 Score E Sequences producing significant alignments: (Bits) Value seq2003 134 1e-26 >seq2003 Length=7520 Score = 134 bits (148), Expect = 1e-26 Identities = 294/438 (67%), Gaps = 2/438 (0%) Strand=Plus/Minus Query 14844 TTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACCTTTGTTGTTC 14903 ||||| |||| || ||||| |||||||| | |||||||| ||||| || |||||| Sbjct 7083 TTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTT 7024 Query 14904 TTTAATACCAAAAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAGCTGCA 14963 || | |||| || ||| || ||||| ||||||| || || | | || || || Sbjct 7023 TTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCC 6964 Query 14964 CCACCACGGACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAGAAA 15023 ||||| || |||||||| || || || ||||| || |||| ||| || |||| |||| Sbjct 6963 CCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAGTTTGTAGAAC 6904 Query 15024 GGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATC 15083 || | || ||||||| ||||||| || || | ||| || || || Sbjct 6903 GGCAGGCAACCGGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCCCAGCGCGCGGATG 6844 Query 15084 ATACCGGCGTTGATGCCTATACCAGCTCGCTTGCT-GATATACTTAATAATACTGTTACT 15142 || ||||||| |||||| || || || |||| || |||||| | || | | | Sbjct 6843 CGGCCCGCGTTGACGCCTATGCCGGCGCG-TTGCGAGACATACTTCACGATCGCGCTGGT 6785 Query 15143 TGCTGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACTAAACTG 15202 | |||||| || | ||| || || || || | ||| || || || ||||| Sbjct 6784 GGTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAACTG 6725 Query 15203 ACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTGTCGAGTAGA 15262 || ||||||||||| | || ||||| || || ||||||| || |||| ||||| Sbjct 6724 GCGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGATCTTGAAGGTAGA 6665 Query 15263 TACAGCGTCATAAAAGCG 15280 || || || |||||||| Sbjct 6664 CACCGCATCGTAAAAGCG 6647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505730109532120