Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_027349.1 Length=166977 Score E Sequences producing significant alignments: (Bits) Value seq2003 95.1 1e-14 >seq2003 Length=7520 Score = 95.1 bits (104), Expect = 1e-14 Identities = 285/436 (65%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 139546 CTGGACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 139605 ||| ||||||||||| | |||||| | |||||||||||||||||| ||| ||||||| Sbjct 7078 CTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTTTTCAG 7019 Query 139606 AACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 139665 || || || ||| ||||| | ||||| | || || | || || || || || Sbjct 7018 CACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCCCCACC 6959 Query 139666 ACGAATTCCGCCCTGTGAACACGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAAT 139725 || | |||||||| || || ||||| || |||| ||| || |||| | || || | Sbjct 6958 CCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAGTTTGTAGAACGGCAG 6899 Query 139726 AACACCAGTATGACGCACTTCACCTGTGCCA---ATCTTAGAACCTTCGGCACGAATCAT 139782 ||| ||||| || |||| || |||| |||| || || || || Sbjct 6898 GCAACCGGTATGTTGCGCTTCGCC---GCCACGTATCTCGCTGCCCAGCGCGCGGATGCG 6842 Query 139783 ACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGAAGC 139842 || |||| | || || || ||||||| |||| ||| | || || | || | | Sbjct 6841 GCCCGCGTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGATCG-CGCTGGTGG 6783 Query 139843 CT-TATTGATAGACTTCAGCGAATCACCTGCCTCAATAACAACACATGAACTAAACTGCC 139901 | |||||| | ||| ||| | ||| || | || || || || ||||| | Sbjct 6782 TTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAACTGGC 6723 Query 139902 GAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTAGATA 139961 | || |||||||| ||| ||||| ||||| || |||| || |||| ||||| | Sbjct 6722 GCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGATCTTGAAGGTAGACA 6663 Query 139962 CTGCTTCATAAAAACG 139977 | || || ||||| || Sbjct 6662 CCGCATCGTAAAAGCG 6647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534136412953160