Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq1469 104 5e-17 seq2659 87.8 4e-12 >seq1469 Length=11399 Score = 104 bits (114), Expect = 5e-17 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 210919 TTTGGCGGTGAAGGTGAGATTTGAACTCACGGAGGACTTTCGCCCTCGACGGTTTTCAAG 210978 |||||||| |||||||||| ||||||||||||| | | |||||||| ||||||||| Sbjct 80 TTTGGCGGAAGAGGTGAGATTCGAACTCACGGAGGGCGTGAACCCTCGACAGTTTTCAAG 139 Query 210979 ACCGTTGCATTAAACCGCTCTGCCACT 211005 || || ||||||||||||||||||||| Sbjct 140 ACTGTAGCATTAAACCGCTCTGCCACT 166 >seq2659 Length=4889 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/96 (81%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 209106 TATTGGCAGTGAGTGTGGGATTCGAACCCACGATAC-GCTTT---CGCATATGCTACCTT 209161 ||||||| ||||| | ||||||||||||| |||||| | ||| | |||||||| |||| Sbjct 4511 TATTGGCGGTGAGCGAGGGATTCGAACCCTCGATACAGGTTTAAGCCCATATGCTTCCTT 4452 Query 209162 AGCAGGGTAGTGATTTCAACCACTCATCCAACTCAC 209197 ||||||| |||| ||| ||||||| ||| ||||| Sbjct 4451 AGCAGGGAAGTGCCTTCGACCACTCGGCCAGCTCAC 4416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113697922752584