Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_027381.1 Length=68365 Score E Sequences producing significant alignments: (Bits) Value seq2169 82.4 3e-11 >seq2169 Length=6790 Score = 82.4 bits (90), Expect = 3e-11 Identities = 174/254 (69%), Gaps = 8/254 (3%) Strand=Plus/Plus Query 8764 ACTATGCAGGTATGATTTTACCTCGTTCTGGGTTAGGGCATAAACATGGTATTGTGCTTG 8823 ||||||| | |||||||| || |||||||| || || ||||||||||| || ||||| | Sbjct 2782 ACTATGCTGCCATGATTTTGCCGCGTTCTGGCTTGGGTCATAAACATGGGATAGTGCTGG 2841 Query 8824 GAAATCTTACAGGTCTCATTGATAGTGATTATCAAGGGGAACTGATGGTAAGCCTCTGGA 8883 | || || ||| || ||||| |||||| || || ||||| | || ||||| Sbjct 2842 GCAACCTGGTAGGGCTGATTGACTCTGATTACCAGGGTCAACTGCTTGTTTCATGCTGGA 2901 Query 8884 ATCGCTCTA-CAA--AGCCTTTTACTATTAATCCAGGTGACCGTATTGCTCAGTTAGTTA 8940 |||| || ||| |||| || | | || ||| || || | || || | || | Sbjct 2902 ATCG---TAGCAAGGAGCCGTTCATCCTGAACCCAATGGAGCGGGTCGCGCAAATGGTGA 2958 Query 8941 TTGTGCCTGTAATGCAGCCTGAATTTGTTATAGTAGAC-TCTTTTGAAGCTACTGAAAGA 8999 ||||||| || ||||| | || ||| ||| || ||| ||| ||| | ||| | Sbjct 2959 TTGTGCCGGTTGTGCAGGCGGACTTTCATATCGTGGACGAGTTTACCAGC-AGTGAGCGT 3017 Query 9000 GGCGAAGGTGGTTT 9013 ||||||||||| || Sbjct 3018 GGCGAAGGTGGCTT 3031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 218618463459938