Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_027381.1
Length=68365
Score E
Sequences producing significant alignments: (Bits) Value
seq2169 82.4 3e-11
>seq2169
Length=6790
Score = 82.4 bits (90), Expect = 3e-11
Identities = 174/254 (69%), Gaps = 8/254 (3%)
Strand=Plus/Plus
Query 8764 ACTATGCAGGTATGATTTTACCTCGTTCTGGGTTAGGGCATAAACATGGTATTGTGCTTG 8823
||||||| | |||||||| || |||||||| || || ||||||||||| || ||||| |
Sbjct 2782 ACTATGCTGCCATGATTTTGCCGCGTTCTGGCTTGGGTCATAAACATGGGATAGTGCTGG 2841
Query 8824 GAAATCTTACAGGTCTCATTGATAGTGATTATCAAGGGGAACTGATGGTAAGCCTCTGGA 8883
| || || ||| || ||||| |||||| || || ||||| | || |||||
Sbjct 2842 GCAACCTGGTAGGGCTGATTGACTCTGATTACCAGGGTCAACTGCTTGTTTCATGCTGGA 2901
Query 8884 ATCGCTCTA-CAA--AGCCTTTTACTATTAATCCAGGTGACCGTATTGCTCAGTTAGTTA 8940
|||| || ||| |||| || | | || ||| || || | || || | || |
Sbjct 2902 ATCG---TAGCAAGGAGCCGTTCATCCTGAACCCAATGGAGCGGGTCGCGCAAATGGTGA 2958
Query 8941 TTGTGCCTGTAATGCAGCCTGAATTTGTTATAGTAGAC-TCTTTTGAAGCTACTGAAAGA 8999
||||||| || ||||| | || ||| ||| || ||| ||| ||| | ||| |
Sbjct 2959 TTGTGCCGGTTGTGCAGGCGGACTTTCATATCGTGGACGAGTTTACCAGC-AGTGAGCGT 3017
Query 9000 GGCGAAGGTGGTTT 9013
||||||||||| ||
Sbjct 3018 GGCGAAGGTGGCTT 3031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 218618463459938
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |