Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq5172 96.9 3e-15
>seq5172
Length=1594
Score = 96.9 bits (106), Expect = 3e-15
Identities = 409/634 (65%), Gaps = 28/634 (4%)
Strand=Plus/Minus
Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996
|| |||||||| || ||||| || || || || || ||||| |||| ||| |||
Sbjct 1593 CGTTGTTTTTACGGTTTTCAGATCATGATGGAGAACATCCATTCTGAAACCTACGCTCTA 1534
Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAG----AAGCATCGATTGTTTAATGCGAT 44052
||| | ||||| || || || ||| || || |||| |||| |||||
Sbjct 1533 CTGCTGGATACTTATATTCGCGA----CACAAGTGAAAAAAATCGCCTGTTCCGCGCGAT 1478
Query 44053 AGAAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAA 44111
||||| | ||| ||| | | | ||||| || ||||| || ||||| | ||
Sbjct 1477 TGAAACCCTGCCTTGCG-TCACCCGCAAAGCTGAGTGGGCTCTGCGCTGGATCGAA--AA 1421
Query 44112 ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG 44171
| | |||| | || || |||||||| ||||| | | ||||||||||||||||| |
Sbjct 1420 AGGCAGCTTT-GCTGAGCGCCTTGTCGCCTTTGCCGCCATTGAAGGCATTTTCTTTTCTG 1362
Query 44172 G-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTT 44230
| | | | ||| |||| || ||| | || || || || ||||||| || |||| |||
Sbjct 1361 GTAGCTTCTGCT-CCATTTTCTGGCTTAAAAAGCGTGGCCTGATGCCGGGCTTGAGTTTT 1303
Query 44231 TCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG--TTAC 44288
|||||||| | || ||| ||||||||| | ||| || || || |||||| |||
Sbjct 1302 TCAAATGAACTGATCTCTCGCGATGAAGGCATGCATACTGACTTCGCCTGCTTGCTGTAC 1243
Query 44289 TTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGG 44348
| | | | | | | | || || | | | | || ||| ||| || |
Sbjct 1242 CAGCAGCTTTTAAATAAGCT---CCCGGCTGAACGCC--TGCGTGAGATTATTGCCGACG 1188
Query 44349 CAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGA 44408
| || || ||||| |||||| | || || || |||||| | || || ||||
Sbjct 1187 CGGTTGCAATTGAACAGGAATTTGTCACCGATGCCTTGCCTGTACGCCTGATCGGTATGA 1128
Query 44409 A---TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAAC 44465
| ||| | ||||||| || || || || | |||| || || | || || ||
Sbjct 1127 ACGCTGACC---TGATGAAACAGTACATCGAGTTTGTTGCTGACCGCCTGCTACTGACAC 1071
Query 44466 TGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGT 44525
||||| ||| ||| | ||||| || ||||| ||||||||| ||||| |
Sbjct 1070 TGGGTGAGCCCAAAATGTATCACGCTCAAAATCCCTTTGACTTTATGGAACTGATTTCAT 1011
Query 44526 TGGAAGGCAAAACAAACTTTTTTGAAAAACGCGT 44559
| |||||||||| || || ||||||||||| ||
Sbjct 1010 TACAAGGCAAAACCAATTTCTTTGAAAAACGTGT 977
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397411033194415
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |