Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5172 96.9 3e-15 >seq5172 Length=1594 Score = 96.9 bits (106), Expect = 3e-15 Identities = 409/634 (65%), Gaps = 28/634 (4%) Strand=Plus/Minus Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 || |||||||| || ||||| || || || || || ||||| |||| ||| ||| Sbjct 1593 CGTTGTTTTTACGGTTTTCAGATCATGATGGAGAACATCCATTCTGAAACCTACGCTCTA 1534 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAG----AAGCATCGATTGTTTAATGCGAT 44052 ||| | ||||| || || || ||| || || |||| |||| ||||| Sbjct 1533 CTGCTGGATACTTATATTCGCGA----CACAAGTGAAAAAAATCGCCTGTTCCGCGCGAT 1478 Query 44053 AGAAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAA 44111 ||||| | ||| ||| | | | ||||| || ||||| || ||||| | || Sbjct 1477 TGAAACCCTGCCTTGCG-TCACCCGCAAAGCTGAGTGGGCTCTGCGCTGGATCGAA--AA 1421 Query 44112 ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG 44171 | | |||| | || || |||||||| ||||| | | ||||||||||||||||| | Sbjct 1420 AGGCAGCTTT-GCTGAGCGCCTTGTCGCCTTTGCCGCCATTGAAGGCATTTTCTTTTCTG 1362 Query 44172 G-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTT 44230 | | | | ||| |||| || ||| | || || || || ||||||| || |||| ||| Sbjct 1361 GTAGCTTCTGCT-CCATTTTCTGGCTTAAAAAGCGTGGCCTGATGCCGGGCTTGAGTTTT 1303 Query 44231 TCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG--TTAC 44288 |||||||| | || ||| ||||||||| | ||| || || || |||||| ||| Sbjct 1302 TCAAATGAACTGATCTCTCGCGATGAAGGCATGCATACTGACTTCGCCTGCTTGCTGTAC 1243 Query 44289 TTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGG 44348 | | | | | | | | || || | | | | || ||| ||| || | Sbjct 1242 CAGCAGCTTTTAAATAAGCT---CCCGGCTGAACGCC--TGCGTGAGATTATTGCCGACG 1188 Query 44349 CAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGA 44408 | || || ||||| |||||| | || || || |||||| | || || |||| Sbjct 1187 CGGTTGCAATTGAACAGGAATTTGTCACCGATGCCTTGCCTGTACGCCTGATCGGTATGA 1128 Query 44409 A---TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAAC 44465 | ||| | ||||||| || || || || | |||| || || | || || || Sbjct 1127 ACGCTGACC---TGATGAAACAGTACATCGAGTTTGTTGCTGACCGCCTGCTACTGACAC 1071 Query 44466 TGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGT 44525 ||||| ||| ||| | ||||| || ||||| ||||||||| ||||| | Sbjct 1070 TGGGTGAGCCCAAAATGTATCACGCTCAAAATCCCTTTGACTTTATGGAACTGATTTCAT 1011 Query 44526 TGGAAGGCAAAACAAACTTTTTTGAAAAACGCGT 44559 | |||||||||| || || ||||||||||| || Sbjct 1010 TACAAGGCAAAACCAATTTCTTTGAAAAACGTGT 977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397411033194415