Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq179 95.1 4e-14
seq5172 86.0 2e-11
>seq179
Length=46302
Score = 95.1 bits (104), Expect = 4e-14
Identities = 88/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030
||| ||||| || ||| | || ||||| || || ||| || ||||| |||||||| ||
Sbjct 21977 CGGGATTATCCCCATGCTTCGCGTGTTTAATGACACGGCACGATACGTGGATCAAGGTGG 21918
Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGAC 255082
|||||||||| |||| |||| | |||||| |||| ||||||||||| |||
Sbjct 21917 CGGCAAACGCAAAGGATCGTTTGCGATCTACTTGGAACCGTGGCACGCAGAC 21866
>seq5172
Length=1594
Score = 86.0 bits (94), Expect = 2e-11
Identities = 124/174 (71%), Gaps = 1/174 (1%)
Strand=Plus/Minus
Query 443688 GAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTT 443747
||||| |||||| | ||||| || ||||| ||||| | | ||||| | || |||
Sbjct 1425 GAAAAAGGCAGCTTTGCTGAGCGCCTTGTCGCCTTTGCCGCCATTGAAGGCATTTTCTTT 1366
Query 443748 AGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGAC 443807
|| ||||| || ||||| |||||| | ||||||||||| || |||| || |||
Sbjct 1365 TCTGGTAGCTTCTGC-TCCATTTTCTGGCTTAAAAAGCGTGGCCTGATGCCGGGCTTGAG 1307
Query 443808 CTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTG 443861
||| || ||||||||| ||| || || || ||||| |||||||||||
Sbjct 1306 TTTTTCAAATGAACTGATCTCTCGCGATGAAGGCATGCATACTGACTTCGCCTG 1253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588147085797935
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |