Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq179 95.1 4e-14 seq5172 86.0 2e-11 >seq179 Length=46302 Score = 95.1 bits (104), Expect = 4e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||| ||||| || ||| | || ||||| || || ||| || ||||| |||||||| || Sbjct 21977 CGGGATTATCCCCATGCTTCGCGTGTTTAATGACACGGCACGATACGTGGATCAAGGTGG 21918 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGAC 255082 |||||||||| |||| |||| | |||||| |||| ||||||||||| ||| Sbjct 21917 CGGCAAACGCAAAGGATCGTTTGCGATCTACTTGGAACCGTGGCACGCAGAC 21866 >seq5172 Length=1594 Score = 86.0 bits (94), Expect = 2e-11 Identities = 124/174 (71%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 443688 GAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTT 443747 ||||| |||||| | ||||| || ||||| ||||| | | ||||| | || ||| Sbjct 1425 GAAAAAGGCAGCTTTGCTGAGCGCCTTGTCGCCTTTGCCGCCATTGAAGGCATTTTCTTT 1366 Query 443748 AGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGAC 443807 || ||||| || ||||| |||||| | ||||||||||| || |||| || ||| Sbjct 1365 TCTGGTAGCTTCTGC-TCCATTTTCTGGCTTAAAAAGCGTGGCCTGATGCCGGGCTTGAG 1307 Query 443808 CTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTG 443861 ||| || ||||||||| ||| || || || ||||| ||||||||||| Sbjct 1306 TTTTTCAAATGAACTGATCTCTCGCGATGAAGGCATGCATACTGACTTCGCCTG 1253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588147085797935