Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq798 143 3e-29 >seq798 Length=20785 Score = 143 bits (158), Expect = 3e-29 Identities = 181/251 (72%), Gaps = 12/251 (5%) Strand=Plus/Minus Query 58103 GGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTCAGTTATCTCGATTACGTC 58162 |||||||| | || ||||||||||||||||||||||| | || ||||| |||||||| Sbjct 6884 GGCTGTAAGTCTGGCCTGGTATTCAACCCGGCAACGCCTTTGAGCTATCTTGATTACGTG 6825 Query 58163 ATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCAGTCT 58222 ||||| ||| |||| |||| |||| ||||| |||||||| || || || || ||| Sbjct 6824 ATGGATAAAGTGGACATGATTTTGCTCATGTCTGTGAACCCTGGTTTTGGTGGTCAGAAA 6765 Query 58223 TTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGTCGCCGCATTGATGCGT----- 58277 |||||||| || || | ||||||| |||| |||| ||| |||||||| | Sbjct 6764 TTTATTCCCTCAACCCTCGGTAAACTGAAAGAAGCGCGTGCCCGTATTGATGCTTACACT 6705 Query 58278 -------CCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAACAATATC 58330 | || | | || | |||||||| ||||| |||||||| | | |||||| Sbjct 6704 GCAGAAACTGGCCGCCAAATCTGGCTGGAAGTAGACGGTGGCGTGAATGCCAGCAATATT 6645 Query 58331 GGCGAGATCGC 58341 | ||||||||| Sbjct 6644 GCCGAGATCGC 6634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471186918302840