Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq69 111 2e-19 seq1591 93.3 5e-14 seq9283 87.8 2e-12 seq9280 87.8 2e-12 >seq69 Length=63067 Score = 111 bits (122), Expect = 2e-19 Identities = 328/499 (66%), Gaps = 10/499 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| || ||||| ||||| || | ||| || | ||||| Sbjct 13392 TACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCATC 13333 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 |||||||||| ||||| || | |||| | ||| || | | | || || Sbjct 13332 CAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAGTACAACAGGCGG 13273 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550 |||| ||| |||||||||||| | |||| | | |||||||| || || || | | Sbjct 13272 TCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAACG 13213 Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 122610 || || | |||| | ||| | | ||| ||| || || || | ||| | |||| Sbjct 13212 GGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGAATGATCGTGTGG 13153 Query 122611 ATAGTTTC----GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666 | || || || || | || || | | | ||| |||| |||| || Sbjct 13152 ACGCGGTCCTCGGGCAGCTTGTTCACTA-GCTTGGAGTACATGAGG--CACG-CAAAGTC 13097 Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726 | ||| | ||||||||||| ||| || || || ||||||| || || |||||||| Sbjct 13096 CGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAG 13037 Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 ||| |||||||||| |||| | || | |||||| || || |||||||| || || || || Sbjct 13036 ACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGAC 12977 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTT-TGCATCAAACCATTTCA 122845 | ||||| || | || || || ||| | || || |||| || || |||| || | Sbjct 12976 CGAGGCAAATGCCAGCAGCCGCTCCGCGTACGA-AGATACTTGTGGGTCGCACCACTTGA 12918 Query 122846 TTGCCCATTTCGCCTTCTT 122864 ||||| || || ||||| Sbjct 12917 GCGCCCAATTGGCTTTCTT 12899 >seq1591 Length=10447 Score = 93.3 bits (102), Expect = 5e-14 Identities = 244/370 (66%), Gaps = 2/370 (1%) Strand=Plus/Minus Query 11446 CTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGT 11505 || ||| |||||||| || || || | | ||| | ||| || | ||| | || || || Sbjct 1361 CTGGCGGTCAAAACGGCCAGGACGCAACAAGGCTTTATCCAGCACATCAGCACGGTTGGT 1302 Query 11506 GGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTG 11565 || || || || | | ||| | | | ||||| ||||||||||| | | || Sbjct 1301 TGCAGCGATCACAATCACGCCGGAGTTAGCCTCAAAACCATCCATCTCCACCAACATCTG 1242 Query 11566 ATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCC 11625 || | ||||||||| | ||| || || | | ||| |||| || || || Sbjct 1241 GTTCAATGTTTGTTCACGCTCGTCGTTACCACCACCAGTACCTGCACCACGATGACGACC 1182 Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 11685 || || ||||||||||| || || | ||||| || ||||| ||| ||||||| Sbjct 1181 TACAGCGTCAATCTCATCGATAAAAATGATACAAGGCGCATTTTTCTTGGCTGTTTCAAA 1122 Query 11686 GAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAG- 11744 | || || || | | ||||||||||| ||||||||||| ||||||| | | | Sbjct 1121 CATGTCACGCACGCGTGCCGCACCCACACCGACAAACATCTCGACAAAGTCAGAACCTGA 1062 Query 11745 AGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 | ||| || ||| || || |||| ||||| || || || ||||| || | ||| || | Sbjct 1061 AATACT-GAAGAAAGGCACTTTTGCCTCACCGGCAATCGCACGGGCCAGCAAGGTTTTAC 1003 Query 11805 CCGTACCTGG 11814 | || || || Sbjct 1002 CTGTCCCAGG 993 >seq9283 Length=757 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 386 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 445 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 446 CCGGTAGGAGCTT 458 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 545 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 604 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 605 CCGGTAGGAGCTT 617 >seq9280 Length=2329 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 76 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 135 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 136 CCGGTAGGAGCTT 148 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 681 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 740 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 741 CCGGTAGGAGCTT 753 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 961 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 1020 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 1021 CCGGTAGGAGCTT 1033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 1290 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 1349 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 1350 CCGGTAGGAGCTT 1362 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 1796 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 1855 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 1856 CCGGTAGGAGCTT 1868 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 2073 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 2132 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 2133 CCGGTAGGAGCTT 2145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627959124736800