Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq69 111 2e-19
seq1591 93.3 5e-14
seq9283 87.8 2e-12
seq9280 87.8 2e-12
>seq69
Length=63067
Score = 111 bits (122), Expect = 2e-19
Identities = 328/499 (66%), Gaps = 10/499 (2%)
Strand=Plus/Minus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
|| || || || |||||||| || ||||| ||||| || | ||| || | |||||
Sbjct 13392 TACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCATC 13333
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490
|||||||||| ||||| || | |||| | ||| || | | | || ||
Sbjct 13332 CAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAGTACAACAGGCGG 13273
Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550
|||| ||| |||||||||||| | |||| | | |||||||| || || || | |
Sbjct 13272 TCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAACG 13213
Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 122610
|| || | |||| | ||| | | ||| ||| || || || | ||| | ||||
Sbjct 13212 GGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGAATGATCGTGTGG 13153
Query 122611 ATAGTTTC----GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666
| || || || || | || || | | | ||| |||| |||| ||
Sbjct 13152 ACGCGGTCCTCGGGCAGCTTGTTCACTA-GCTTGGAGTACATGAGG--CACG-CAAAGTC 13097
Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726
| ||| | ||||||||||| ||| || || || ||||||| || || ||||||||
Sbjct 13096 CGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAG 13037
Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786
||| |||||||||| |||| | || | |||||| || || |||||||| || || || ||
Sbjct 13036 ACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGAC 12977
Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTT-TGCATCAAACCATTTCA 122845
| ||||| || | || || || ||| | || || |||| || || |||| || |
Sbjct 12976 CGAGGCAAATGCCAGCAGCCGCTCCGCGTACGA-AGATACTTGTGGGTCGCACCACTTGA 12918
Query 122846 TTGCCCATTTCGCCTTCTT 122864
||||| || || |||||
Sbjct 12917 GCGCCCAATTGGCTTTCTT 12899
>seq1591
Length=10447
Score = 93.3 bits (102), Expect = 5e-14
Identities = 244/370 (66%), Gaps = 2/370 (1%)
Strand=Plus/Minus
Query 11446 CTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGT 11505
|| ||| |||||||| || || || | | ||| | ||| || | ||| | || || ||
Sbjct 1361 CTGGCGGTCAAAACGGCCAGGACGCAACAAGGCTTTATCCAGCACATCAGCACGGTTGGT 1302
Query 11506 GGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTG 11565
|| || || || | | ||| | | | ||||| ||||||||||| | | ||
Sbjct 1301 TGCAGCGATCACAATCACGCCGGAGTTAGCCTCAAAACCATCCATCTCCACCAACATCTG 1242
Query 11566 ATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCC 11625
|| | ||||||||| | ||| || || | | ||| |||| || || ||
Sbjct 1241 GTTCAATGTTTGTTCACGCTCGTCGTTACCACCACCAGTACCTGCACCACGATGACGACC 1182
Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 11685
|| || ||||||||||| || || | ||||| || ||||| ||| |||||||
Sbjct 1181 TACAGCGTCAATCTCATCGATAAAAATGATACAAGGCGCATTTTTCTTGGCTGTTTCAAA 1122
Query 11686 GAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAG- 11744
| || || || | | ||||||||||| ||||||||||| ||||||| | | |
Sbjct 1121 CATGTCACGCACGCGTGCCGCACCCACACCGACAAACATCTCGACAAAGTCAGAACCTGA 1062
Query 11745 AGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804
| ||| || ||| || || |||| ||||| || || || ||||| || | ||| || |
Sbjct 1061 AATACT-GAAGAAAGGCACTTTTGCCTCACCGGCAATCGCACGGGCCAGCAAGGTTTTAC 1003
Query 11805 CCGTACCTGG 11814
| || || ||
Sbjct 1002 CTGTCCCAGG 993
>seq9283
Length=757
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 386 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 445
Query 145342 CAGGTAGGAGCTT 145354
| |||||||||||
Sbjct 446 CCGGTAGGAGCTT 458
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 545 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 604
Query 145342 CAGGTAGGAGCTT 145354
| |||||||||||
Sbjct 605 CCGGTAGGAGCTT 617
>seq9280
Length=2329
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 76 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 135
Query 145342 CAGGTAGGAGCTT 145354
| |||||||||||
Sbjct 136 CCGGTAGGAGCTT 148
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 681 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 740
Query 145342 CAGGTAGGAGCTT 145354
| |||||||||||
Sbjct 741 CCGGTAGGAGCTT 753
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 961 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 1020
Query 145342 CAGGTAGGAGCTT 145354
| |||||||||||
Sbjct 1021 CCGGTAGGAGCTT 1033
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 1290 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 1349
Query 145342 CAGGTAGGAGCTT 145354
| |||||||||||
Sbjct 1350 CCGGTAGGAGCTT 1362
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 1796 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 1855
Query 145342 CAGGTAGGAGCTT 145354
| |||||||||||
Sbjct 1856 CCGGTAGGAGCTT 1868
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 2073 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 2132
Query 145342 CAGGTAGGAGCTT 145354
| |||||||||||
Sbjct 2133 CCGGTAGGAGCTT 2145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627959124736800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |