Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq179 172 7e-38 seq69 140 4e-28 seq4319 113 6e-20 seq1591 113 6e-20 seq8027 98.7 1e-15 >seq179 Length=46302 Score = 172 bits (190), Expect = 7e-38 Identities = 681/1056 (64%), Gaps = 33/1056 (3%) Strand=Plus/Plus Query 118517 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 118576 |||||| ||||||||||||| |||||||| | ||| | ||| || || | ||| || || Sbjct 21251 AATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGTGGCGCATGTTGGA 21310 Query 118577 CTTCCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 118635 | | ||||| ||| || |||| || ||||| || || ||| | || || || | Sbjct 21311 CGTGCGAGCT-TCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGTTCAGGTTACGCG 21369 Query 118636 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTG 118694 | || || | || | || | ||||| | ||||| ||| || || |||||| Sbjct 21370 TCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCG----TCTTCA--- 21422 Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754 ||| |||| || || || | ||||||| ||||||||| | |||||| ||| Sbjct 21423 ACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCGACGTG 21482 Query 118755 TACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 118812 |||| || | ||| ||||||||| || || || ||||| | ||||| || | Sbjct 21483 AACTCCATCACTTCACAGCACAAGTTACTGGACCGG--ATCGTGCCAAGGTTCTGCTGGT 21540 Query 118813 TTGACTTTGTGTTACAC-GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 | || |||| | | ||| |||||||| || ||||| | ||| ||||| || | || Sbjct 21541 TCGA-TTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATCTGC 21599 Query 118872 GACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGG-CGT-----TGGCTCGC 118925 | | | || || ||| | || ||||| || || ||| | || || Sbjct 21600 GCATCCAAGATCGCAAACCACA-----GCTGCTGGG-CATTGATCGTCTTCCTCGCCCGT 21653 Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985 ||||||| ||||||||| || | | |||||||| || ||| | ||| | ||| Sbjct 21654 CCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAGC 21713 Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045 ||||| || | || ||| ||||| | | ||| | |||| | || ||||| |||||| Sbjct 21714 CCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATG 21773 Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105 || || || || | ||| | ||| |||| | ||||| ||| ||||| || Sbjct 21774 AATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCA 21833 Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165 ||||| ||||| || | ||| || | | || |||||||||||||||| ||| | | Sbjct 21834 TGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATC 21893 Query 119166 GCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222 || | || || || || | ||| | || | || || | || ||| | ||||| Sbjct 21894 GCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAAC 21953 Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTA 119282 || |||||||| || || || || | || |||||| || || || || || Sbjct 21954 ACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATTC 22013 Query 119283 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCG 119342 |||| | || || ||| || || ||||| || |||||||| || || || ||| Sbjct 22014 GTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGCA 22073 Query 119343 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 119402 || | | | | | ||||| || || || || ||| | || | || | | ||| Sbjct 22074 CATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAAG 22133 Query 119403 CAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATG 119462 || |||| ||| || | || ||||| || || || || || || ||||| ||| | Sbjct 22134 CACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGT- 22192 Query 119463 AACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTG 119521 || | || | || ||||| || || || ||||| | ||| |||||| | || Sbjct 22193 AAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATG 22252 Query 119522 AATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 || || |||| ||| || | || ||| | ||| || Sbjct 22253 GATGCCAATCGCGACTCGTAAAATCATCTGTTGCGG 22288 >seq69 Length=63067 Score = 140 bits (154), Expect = 4e-28 Identities = 530/815 (65%), Gaps = 24/815 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT-GATATTCTCCAT 129786 || || || || ||||||||||| ||||| ||||| || | |||| ||| | ||||| Sbjct 13392 TACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTG-AAGCGAGATCATGTCCAT 13334 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | |||||||||||||||| | |||| | ||| || | | | | || || Sbjct 13333 CCAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAGTACAACAGGCG 13274 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 |||| || |||||||||||| |||| | | |||||||| || || || | | Sbjct 13273 GTCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAAC 13214 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || |||| |||| | ||| | | ||| || ||| || || || | ||| |||| Sbjct 13213 GGGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGAATGAT--CGTG 13156 Query 129967 AATGGTCTCCGTGCCAGGTCTA-TTGCGCAAAGTCTTGAAGAGTTC------CACGGCAA 130019 ||| | | || | || | ||| || |||| |||| | |||| ||| Sbjct 13155 --TGGACGCGGTCCTCGGGCAGCTTGTTCACTAGCTTG--GAGTACATGAGGCACG-CAA 13101 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | ||| ||| | ||||| || || ||||| || |||||||||| || || |||| Sbjct 13100 AGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 13041 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 ||||||| |||||||||| ||| || |||| || || ||||| |||||||| || || | Sbjct 13040 TGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTT 12981 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTT-TGTATCAAACCAC 130198 | || | || || || | || ||||| || | || | |||| || || ||||| Sbjct 12980 CGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGA-AGATACTTGTGGGTCGCACCAC 12922 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCG-ATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 || | |||||| | | |||| | ||| | |||||||| ||||| ||||| | || Sbjct 12921 TTGAGCGCCCAAT-TGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAG 12863 Query 130258 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 130317 | | ||| || | | ||||| |||||| | || ||||| ||||| ||| Sbjct 12862 GTGATCCTTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGA 12803 Query 130318 ATGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTAC 130377 |||| ||||| | | ||| | | || || | || ||||| | || || Sbjct 12802 GTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCAC 12743 Query 130378 CTCATCTGCAAAATTGTTATTG--ATATTCTCAAAAACAATTCCATCGGACCCAGCAAAA 130435 |||| ||| ||| | | || | | |||||| ||||| ||||| | ||||| Sbjct 12742 TTCAT-TGCTAAAGT-TCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAG 12685 Query 130436 AACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCA 130495 || || || | || ||| || || | | ||||| || | ||| || |||||| | Sbjct 12684 AAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTTG 12625 Query 130496 AGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 ||||| | | | |||| |||||| |||||||| Sbjct 12624 AGATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCA 12590 >seq4319 Length=2037 Score = 113 bits (124), Expect = 6e-20 Identities = 201/288 (70%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || |||||||| || || || || | ||| | ||||| |||||| ||||||||| || Sbjct 1372 CGGTCAAAGCGGCCGGGACGCAGCAAAGCGGCATCAAGAATATCAGGGCGGTTCGTTGCA 1313 Query 14123 GCGATGACAA-CGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATT 14181 || || |||| || || | | || |||||||| ||||| ||| ||| | || || Sbjct 1312 GCAATCACAATCGTTGAGTGATT-GTCTTCAAAGCCGTCCATTTCAATCAGCAACTGGTT 1254 Query 14182 GATGGTTTGTTCGCGTTCATCAT--TCGCAG-GCATACCACCCGCACTGCGTTGCTTACC 14238 | |||||||||||| ||||||| ||| | ||| ||| |||| || || ||| Sbjct 1253 AAGGGTTTGTTCGCGCTCATCATGACCGCCGCCCAT---ACCTGCACCACGCTGACGACC 1197 Query 14239 GACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAA 14298 |||||||||||||| ||||| || | | ||| || || || ||| ||||| Sbjct 1196 AACGGCGTCAATTTCGTCGATAAAGATCAAACAGGGAGCATGTTTTTTGGCCTGGTCAAA 1137 Query 14299 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 | || || |||| ||||| |||||||||||||| || ||||| Sbjct 1136 CAAGTCACGGACTCGAGAAGCACCCACACCCACAAACATTTCAACAAA 1089 >seq1591 Length=10447 Score = 113 bits (124), Expect = 6e-20 Identities = 247/369 (67%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| || || || || | | ||| | || || | |||| ||||| || || Sbjct 1357 CGGTCAAAACGGCCAGGACGCAACAAGGCTTTATCCAGCACATCAGCACGGTTGGTTGCA 1298 Query 14123 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 14179 ||||| |||| | ||| | |||| ||||| ||||||||||| ||| | || Sbjct 1297 GCGATCACAATCACGCCGGA---GTTAGCCTCAAAACCATCCATCTCCACCAACATCTGG 1241 Query 14180 TTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTGCTTACCG 14239 || | |||||||| || || || || || | ||| |||| || || ||| Sbjct 1240 TTCAATGTTTGTTCACGCTCGTCGTTACCACCACCAGTACCTGCACCACGATGACGACCT 1181 Query 14240 ACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAG 14299 || |||||||| |||||||| |||| |||||| || ||||| ||| |||||| Sbjct 1180 ACAGCGTCAATCTCATCGATAAAAATGATACAAGGCGCATTTTTCTTGGCTGTTTCAAAC 1121 Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 14359 || || ||||| | ||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 1120 ATGTCACGCACGCGTGCCGCACCCACACCGACAAACATCTCGACAAAGTCAGAACCTGAA 1061 Query 14360 CATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCC 14419 || ||| || || || | ||||| || || || ||||| || | ||| || || Sbjct 1060 ATACTGAAGAAAGGCACTTTTGCCTCACCGGCAATCGCACGGGCCAGCAAGGTTTTACCT 1001 Query 14420 GTCCCTGGT 14428 ||||| ||| Sbjct 1000 GTCCCAGGT 992 >seq8027 Length=1067 Score = 98.7 bits (108), Expect = 1e-15 Identities = 281/431 (65%), Gaps = 6/431 (1%) Strand=Plus/Minus Query 117831 TTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATT 117890 |||| || ||||||||||| || || ||||| || | |||||| |||| | |||||| Sbjct 465 TTTGTCCGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAAATGCATG 406 Query 117891 GAGGACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCG 117950 |||| || ||||||| | | || |||||||| || || || | || || ||| | Sbjct 405 GAGGTCAGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGACTGACAG 346 Query 117951 ATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACA 118010 || ||| || || || || |||||||| |||| | | |||||||||||| || Sbjct 345 ATAAAGGCGCCACGGTCAGCTGCCATATCGATCAGGGCACGCTGCTTGATTTCCCAGACG 286 Query 118011 GTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCC 118070 || |||||| | ||| || | || || || || || || || |||||| Sbjct 285 GTTTTGTAGATTTCCTTGATGTTTTCAGGAATCTCAGGAATCGCCTGAATTGATCCATTG 226 Query 118071 GCCTTGACCATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCC 118127 || | || || || || ||| || ||| ||||| | || | || Sbjct 225 GCAGCAATAATTTTATTTTTGAGCACATCATT---CCACAGACCCAGCTCAACTAAGTCG 169 Query 118128 TCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATA 118187 || ||||| || || ||||||| ||||||||| | | | ||| | ||||| Sbjct 168 CGCAGCAGATGTTTGTTAACAACAATAAACTCACCGGACAAGACGCGGCGGGTATAGAGG 109 Query 118188 TTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTG 118247 || | || || |||||||| ||||| || || || | || || | || || || || Sbjct 108 TTAGATGTATAGGGCTCAAAACACTCGTTATTGCCGAGAATCTGAGAGGTTGAAGCAGTC 49 Query 118248 GGCATGGGTGC 118258 |||||||| || Sbjct 48 GGCATGGGCGC 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618363438325480