Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq69 143 3e-29 seq179 107 2e-18 seq1591 98.7 1e-15 seq391 93.3 5e-14 seq4319 91.5 2e-13 seq5172 84.2 3e-11 >seq69 Length=63067 Score = 143 bits (158), Expect = 3e-29 Identities = 205/286 (72%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| ||||| || | | |||||| | || || | || || | Sbjct 12821 CTCATTGACACGTACATTAAAGAGGCGACGGAGAAGGATCACCTTCTGCGCGCGATTGAG 12880 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACA-AAGTC 94790 || | |||||| ||| ||||||||| ||||||| | ||||||| || || |||| Sbjct 12881 ACCATCCCGTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAGTGGTGCGACCCACAAGTA 12940 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | ||| | || ||||| || | |||||||| | || || || || |||||||| || Sbjct 12941 TC-TTCGTACGCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGG 12999 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 || |||||| | || | |||||| |||||||| ||||||||||| || ||| ||||||| Sbjct 13000 CTCGTTCTGCTCGATCTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTC 13059 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 |||||||| || ||| || ||||| | ||| || |||||| Sbjct 13060 GAACGAGCTCATTAGTCGAGATGAGGGCATGCACACGGACTTTGCG 13105 >seq179 Length=46302 Score = 107 bits (118), Expect = 2e-18 Identities = 1053/1684 (63%), Gaps = 56/1684 (3%) Strand=Plus/Minus Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 ||||| ||||| || ||||| || | || | || | || || || || || || || Sbjct 22228 TTGGAAACATATGAATTAATGTCGCAGAAGTTTTTT-ACCCATGCGACCCCGACGCTGTT 22170 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||||| ||||| || | |||||| |||| ||||| | | || | || || || Sbjct 22169 TAATGCCGGTACCCCTCGCCCCCAATTGTCTTCGTGCTTTTTATTGGCTATGAAAGATGA 22110 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || || | || ||||||| || | | | |||||| || || || ||||| || Sbjct 22109 TTCCATTGAAGGAATCTATGATACCTTGAAACAATGTGCGTGCATTTCGAAATGGGCAGG 22050 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 104519 || ||||| || || || || | | |||| || | || || || || || | Sbjct 22049 AGGGATTGGCATTAGTATGCACAATATCCGGGCCACGAATAGCTAC-ATCCGAGGCACTA 21991 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 |||| || | || ||||| || ||||||||||| ||||| | ||| || || || | Sbjct 21990 ATGGCTCTTCGAACGGGATTATCCCCATGCTTCGCGTGTTTAATGACACGGCACGATACG 21931 Query 104580 TAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | |||||| ||| | || || ||||| | || |||| | || || ||||||| Sbjct 21930 TGGATCAAGGTGGCGGCAAACGCAAAGGATCGTTTGCGATCTACTTGGAACCGTGGCACG 21871 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC 104696 | || | | ||||| || || ||||| || || || | || ||| | Sbjct 21870 CAGACGTGTTTGAGTTTCTCGATTTGCGGAAAAATCATGGCAATGAACTCCATCGGGCGC 21811 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 | || | |||| || | ||| | || ||||| |||||||| | || || | | || Sbjct 21810 GGGACTTGTTCTTTGCGTTGTGGGTACCCGATCTATTCATGAAACGGGTGGAAGCAAATG 21751 Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGG 104816 | || ||| | | || |||||| | | || || || || | ||| | ||| || | Sbjct 21750 GTAAGTGGAGTTTGTTCTGTCCAAATGAAGCTCCAGGGCTGTACGAGTACTGGGGCGACG 21691 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTG---- 104872 ||||||| | | || ||||||||| |||| || ||||||| |||| | Sbjct 21690 AGTTTGAGACTTTGTATGAAAAGTACGAACAAGAGGGACGGGCGAGGAAGACGATCAATG 21631 Query 104873 -CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 ||||| || ||||| || || | | | || | || || || || | Sbjct 21630 CCCAGCAGC-----TGTGGTTTGCGATCTTGGATGCGCAGATTGAAACGGGAGTGCCCTT 21576 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 ||||| || || || || |||| || || || |||| | || |||| Sbjct 21575 TATGCTCTATAAGGATGCAGTGAACCGCAAATCGAACCAGCAGAACCTTGGCACGATCCG 21516 Query 104992 GAGTTCCAATCTCT-GTACAG--AAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 | |||| | || || | | || | |||| || || ||||| ||| || Sbjct 21515 G---TCCAGTAACTTGTGCTGTGAAGTGATGGAGTTCACGTCGCCGGATGAAGTGGCGGT 21459 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA 105108 |||||| | || || | || || ||||||| ||| || |||| | ||| | Sbjct 21458 GTGTAATTTGGCGTCGGTAGCGCTGCCCAAGTTTGTTGA-----AGACGGCGTG-TTTAA 21405 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 ||| | || || |||| || || | || || ||||| |||| || ||||| Sbjct 21404 TTACAAGAAGCTGTACGACGTGACCAGCGTCGTGACGCGTAACCTGAACAAGGTGATTGA 21345 Query 105169 TAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 |||| |||||||||| ||| ||||| | || || ||| | ||||||||| | | Sbjct 21344 GGTGAATTACTACCCCGTTGCAGAA-GCTCGCACGTCCAACATGCGCCACCGTCCAGTCG 21286 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287 | | ||||| |||||||||||||||| || ||||| | |||| ||||| || Sbjct 21285 GCATTGGTGTCCAGGGTCTCGCGGATGCGTTTATTCTCATGAACTACGCGTTTGAAAGCG 21226 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGC--CGCTCTTGA 105345 | ||||| ||| | ||| | ||| || ||||| || || |||| || | || Sbjct 21225 AGCAAGCGCGGGAGCTGAATAAGAACATCTTCGAGACGATCTACTACGCTTCGATGAAGA 21166 Query 105346 -GGCGAGTTCAGAGTTGGCAGAGG--TTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 | ||| | ||| ||| || ||| ||| ||||| || || || || |||| ||||| Sbjct 21165 CGTCGA-TGGAGA-TTGCCA-AGGAATTG--GGTCCGTACGAGACGTTCCAGGGCTCTCC 21111 Query 105403 AGCTTCACAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACCAAGCT----TCAC 105457 ||| ||||||| ||| || || || ||||||| || | || | || Sbjct 21110 AGC-GAGCAAGGGGATCTTCCAGTTCGACATGTGGG-GCGTCACGCCGTCGTCAGGTCTT 21053 Query 105458 TACGACTGGGAAGCTCTCAAG--GAACG-CATCAAGGAGAAGGGTCTTCGTAACAGTCTC 105514 | |||||| | | ||| ||||| |||| || | || |||| ||| ||| Sbjct 21052 TGGGACTGGACGGAGTTGAAGGAGAACGTGATCA---AGTATGGCATTCGCAACTCTCTG 20996 Query 105515 CTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 105574 ||| |||| |||||||| || || || || || || || |||| || || || | || Sbjct 20995 CTCGTGGCGCCAATGCCGACGGCTTCGACGGCCCAGATTCTGGGCAACAACGAGTCGATT 20936 Query 105575 GAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 105634 || || |||||| |||| || || | | || || || |||||| |||||| Sbjct 20935 GAGCCGTACACGTCGAATATGTACAACCGCCGCGTGCTGGCTGGCGAGTTTACGATTGTA 20876 Query 105635 AACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGAT 105694 |||||| | || || | || | | || | || ||||| | || | | Sbjct 20875 AACAAGTACCTGATGAAGGAATTGATTGACCTGGGCATCTGGACGCCCGAAGTCCGCAAC 20816 Query 105695 CTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAG 105754 | || |||| | ||||| ||| | ||||| || | || || ||||| | ||| Sbjct 20815 CAAATTCTGAACGACGGTGGCTCCGTGCAAAAGGTTAAGACCATCCCGAATGATGTCAAG 20756 Query 105755 AAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGAT 105814 | |||| ||||| |||||||| ||| |||| || | || | | || ||| Sbjct 20755 GAAAAGTACAAGACAGTGTGGGAAATTAAGCAGAAGTCGATCTTGGATCTCTCGGCTGAT 20696 Query 105815 CGTGGTCGC-TTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGAT 105873 ||||| ||| | |||| || || || | ||| | || | ||| ||||| Sbjct 20695 CGTGG-CGCGTACATTTGCCAGAGCCAGTCGCTCAATATTCATATTGCGGATCCGACGAT 20637 Query 105874 GTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTA 105933 ||||| | || |||||| | ||| ||||||||||| ||||| ||||| ||||| Sbjct 20636 CAGTAAGCTGACGTCGATGCACTTTTACGCGTGGAAGAAGGGGCTCAAGACGGGTATGTA 20577 Query 105934 TTAC 105937 |||| Sbjct 20576 TTAC 20573 >seq1591 Length=10447 Score = 98.7 bits (108), Expect = 1e-15 Identities = 243/367 (66%), Gaps = 4/367 (1%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || || ||||| | | || | ||| || | |||| | || || || || Sbjct 1357 CGGTCAAAACGGCCAGGACGCAACAAGGCTTTATCCAGCACATCAGCACGGTTGGTTGCA 1298 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 ||||| |||| | || | | | ||||||||||||||||| ||| | ||||| Sbjct 1297 GCGATCACAATCACGCCGGAGTTAGCCTCAAAACCATCCATCTCCACCAACATCTGGTTC 1238 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9703 | |||||||| || || || || | | ||| |||| || || || || Sbjct 1237 AATGTTTGTTCACGCTCGTCGTTACCACCACCAGTACCTGCACCACGATGACGACCTACA 1178 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 || ||||||||||| || || | ||| || || ||||| || |||||| | Sbjct 1177 GCGTCAATCTCATCGATAAAAATGATACAAGGCGCATTTTTCTTGGCTGTTTCAAACATG 1118 Query 9764 TCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 || || ||||| || || |||||||| ||||||||||| ||||||| | | ||| Sbjct 1117 TCACG--CACGCGTGCCGCACCCACACCGACAAACATCTCGACAAAGTCAGAACCTGAAA 1060 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 || ||| || || || | ||||| ||||| || ||||| || | || ||||| | Sbjct 1059 TACTGAAGAAAGGCACTTTTGCCTCACCGGCAATCGCACGGGCCAGCAAGGTTTTACCTG 1000 Query 9882 TACCTGG 9888 | || || Sbjct 999 TCCCAGG 993 >seq391 Length=86401 Score = 93.3 bits (102), Expect = 5e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 9758 |||| || ||||||||||||||||| || ||||| || || | ||||| | | | Sbjct 79807 CCACTGCGTCAATCTCATCAATGAAAACAATGCACGGAGCGTTCGCACGAGCTTCCTTGA 79748 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 | || || || ||||| | ||| |||||||| |||||||| | ||| | || | | Sbjct 79747 ACAGGTCGCGCACACGGGATGGGCCTACACCAACGAACATCTCGATAAAATCTGATCCAG 79688 Query 9819 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 || | ||| ||||| ||| |||||| ||| ||||| || || || ||||| | Sbjct 79687 AAATGCTAAAGAACGGGACGCTAGCTTCACCGGCAGTGGCTTTCGCCAGCAGCGTCTTGC 79628 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 | ||||| ||| || | || |||||||| || |||||||| || Sbjct 79627 CTGTACCAGGCGGGCCTACCAGCAGGGCACCCTTCGGGATCTTGGCACC 79579 >seq4319 Length=2037 Score = 91.5 bits (100), Expect = 2e-13 Identities = 325/502 (65%), Gaps = 26/502 (5%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || |||||||| || ||||| || | ||| ||||||| |||||| ||| ||||| || Sbjct 1372 CGGTCAAAGCGGCCGGGACGCAGCAAAGCGGCATCAAGAATATCAGGGCGGTTCGTTGCA 1313 Query 9584 GCGATGACAA-CAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642 || || |||| | | || || | ||||| || ||||| || ||| | ||||| Sbjct 1312 GCAATCACAATCGTTGAGTGATTGTCT-TCAAAGCCGTCCATTTCAATCAGCAACTGGTT 1254 Query 9643 AATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACTGCGTTGCTTTCC 9699 || |||||||| || ||||||| ||| | | ||||| || ||| | || || Sbjct 1253 AAGGGTTTGTTCGCGCTCATCATGACCGCCGCCCATACCTGCACCAC---GCTGACGACC 1197 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGGT---TGATTTTCGCGAGCGACTTC 9756 ||||| ||||| || || || |||| | || || || |||| | || || Sbjct 1196 AACGGCGTCAATTTCGTCGATAAAGATCAAACAGGGAGCATGTTTTTTG---GCCTGGTC 1140 Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9816 ||| | || || || || || |||||||| |||||||| || ||||| | | Sbjct 1139 AAACAAGTCACGGACTCGAGAAGCACCCACACCCACAAACATTTCAACAAATT------C 1086 Query 9817 GGAACATTGGATG------AAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9870 |||| |||| || || ||| || ||||| |||| ||| || | | Sbjct 1085 AGAACCACTGATGCTAAAGAAAGGCACAGAAGCCTCACCAGCAACTGCTTTAGCAATCAA 1026 Query 9871 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACT 9930 || ||||| ||||| ||| || | || | | | ||| ||||||||||||||| Sbjct 1025 GGTTTTACCTGTACCAGGCGGGCCTACAAGCAAGACGCCTTTAGGAATCTTGGCGCCAAG 966 Query 9931 TCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGC 9990 | ||| | ||||| || || || || ||||||||||| | ||| | ||| || Sbjct 965 GGCCTGATATTTATCAGGAGATTTTAGGAAGTCGACAATTTCTTCGAGTTCCTGTTTAGC 906 Query 9991 GGCGTCAATCCCCTCAACATCG 10012 | ||| || |||||||| Sbjct 905 TTCATCAGCACCAGCAACATCG 884 >seq5172 Length=1594 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||||||||| || |||| ||||| |||| || || ||||| |||||| ||| Sbjct 1414 CTTTGCTGAGCGCCTTGTCGCCTTTGCCGCCATTGAAGGCATTTTCTTTTCTGGTAGCTT 1355 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||| | |||| ||||| || ||||| || || ||||| || | | || || || || Sbjct 1354 CTGCTCCATTTTCTGGCTTAAAAAGCGTGGCCTGATGCCGGGCTTGAGTTTTTCAAATGA 1295 Query 94917 GCTTATCTCTCGTGACGAGGG 94937 || |||||||| || || || Sbjct 1294 ACTGATCTCTCGCGATGAAGG 1274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583193119874920