Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq179 196 5e-45 seq18 156 5e-33 seq69 145 8e-30 seq4 123 3e-23 seq5172 93.3 5e-14 >seq179 Length=46302 Score = 196 bits (216), Expect = 5e-45 Identities = 549/833 (66%), Gaps = 21/833 (3%) Strand=Plus/Minus Query 55106 AAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAAT 55165 ||||| |||| ||||| | || ||||| || ||||||||| ||| || || |||| Sbjct 21397 AAGCTGTACGACGTGACCAGCGTCGTGACGCGTAACCTGAACAAGGTGATTGAGGTGAAT 21338 Query 55166 TACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGT 55225 |||||||| || || || |||| ||||||| | || ||||| || ||| ||| ||| Sbjct 21337 TACTACCCCGTTGCAGAAGCTCGCACGTCCAACATGCGCCACCGTCCAGTCGGCATTGGT 21278 Query 55226 GTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCC-TTCGACTCGGAACCTGC 55284 || ||||| | || || || || | | | | | | | || || || | || Sbjct 21277 GTCCAGGGTCTCGCGGATGCGTTTATTCTCAT-GAACTACGCGTTTGAAAGCGAGCAAGC 21219 Query 55285 TCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGT 55343 || || | || || |||||||| || || ||||||| || || | || |||| Sbjct 21218 GCGGGAGCTGAATAAGAACATCTTCGAGACG-ATCTACTACGCTTCGATGAAGACGTCGA 21160 Query 55344 GTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGG 55403 | | || | | ||| | ||||||||||||| | || ||||| ||||| Sbjct 21159 TGGAGATTGCCAAGGAATTGGGTCCGTACGAGACGTTCCAGGGCTCTCCAGCGAGCAAGG 21100 Query 55404 GACTTCTCCAGTTCGATCTATGGGGCA--AGTCTGACCCCATGTTT---------GACA- 55451 | | |||||||||| | |||||| | | | | || || | ||| Sbjct 21099 GGATCTTCCAGTTCGACATGTGGGGCGTCACGCCGTCGTCAGGTCTTTGGGACTGGACGG 21040 Query 55452 AGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGC 55511 |||||||| | || | | || ||| | |||||||| ||||||||||||||||||| Sbjct 21039 AGTTGAAGGAGAACGTGATCAAGTATGGCATTCGCAACTCTCTGCTCGTGGCGCCAATGC 20980 Query 55512 CAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCA 55571 | || || |||||||| ||||| |||||||||||||| || | |||||||||||| | | Sbjct 20979 CGACGGCTTCGACGGCCCAGATTCTGGGCAACAACGAGTCGATTGAGCCGTACACGTCGA 20920 Query 55572 ACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCA 55631 | || ||| ||||| || || || |||||| || | |||||| |||| | | Sbjct 20919 ATATGTACAACCGCCGCGTGCTGGCTGGCGAGTTTACGATTGTAAACAAGTACCTGATGA 20860 Query 55632 AGGACCTGCAGAAGATCAACAAGTGGA-ACCCGCAGATCAAGACGGATATTGTGCGGAAC 55690 |||| || | | || |||| |||| || || | | ||| || || Sbjct 20859 AGGAATTGATTGACCTGGGCATCTGGACGCCCGAAG-TCCGCAACCAAATTCTGAACGAC 20801 Query 55691 GGGGGGTCCGTCCAGAATCTGGAG---ATTCCTCTGCGTCTCAAGGAGATTTACCGGACG 55747 || || ||||| || || | || || || | ||||||| | ||| ||| Sbjct 20800 GGTGGCTCCGTGCAAAAGGTTAAGACCATCCCGAATGATGTCAAGGAAAAGTACAAGACA 20741 Query 55748 GTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATC 55807 |||||||| ||| |||||| | | || | ||||||||||| |||||||| Sbjct 20740 GTGTGGGAAATTAAGCAGAAGTCGATCTTGGATCTCTCGGCTGATCGTGGCGCGTACATT 20681 Query 55808 GACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCG 55867 |||| |||||| || || || || | | |||| | | ||| ||| ||| Sbjct 20680 TGCCAGAGCCAGTCGCTCAATATTCATATTGCGGATCCGACGATCAGTAAGCTGACGTCG 20621 Query 55868 ATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 ||||||||||||| |||||||||||| ||||||||||||||||| || |||| Sbjct 20620 ATGCACTTTTACGCGTGGAAGAAGGGGCTCAAGACGGGTATGTATTACATGCG 20568 Score = 118 bits (130), Expect = 1e-21 Identities = 264/388 (68%), Gaps = 10/388 (3%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 || || || || |||||| || |||| ||||| || || || || || ||||| || Sbjct 22225 GAAACATATGAATTAATGTCGCAGAAGTTTTTTACCCATGCGACCCCGACGCTGTTTAAT 22166 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || ||||| || ||| || |||| ||||| | |||| ||||| ||||| || Sbjct 22165 GCCGGTACCCCTCGCCCCCAATTGTCTTCGTGCTTTTTATTGGCTATGAAAGATGATTCC 22106 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || || ||||| || || | || | ||||| ||| || || ||| | || || Sbjct 22105 ATTGAAGGAATCTATGATACCTTGAAACAATGTGCGTGCATTTCGAAATGGGCAGGAGGG 22046 Query 53423 ATCGGTATCCAC-TGCTCGAACGTCCGTGC---GAACGGCACACCAATCAAGGGGACGAA 53478 || || || ||| | || |||| || ||| || || ||| || || || Sbjct 22045 ATTGGCATTAGTATGCAC-AATATCCGGGCCACGAATAGCT-AC--ATCCGAGGCACTAA 21990 Query 53479 CGGCGTCGCCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 ||| || ||| || || | || ||||| ||||| || || ||||||| || |||| Sbjct 21989 TGGC-TCTTCGAACGGGATTATCCCCATGCTTCGCGTGTTTAATGACACGGCACGATACG 21931 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 | | || ||||| || || ||||| || ||||| || |||||| | || |||||||||| Sbjct 21930 TGGATCAAGGTGGCGGCAAACGCAAAGGATCGTTTGCGATCTACTTGGAACCGTGGCACG 21871 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCG 53625 | ||| | | ||||||||||| |||| Sbjct 21870 CAGACGTGTTTGAGTTTCTCGATTTGCG 21843 >seq18 Length=88283 Score = 156 bits (172), Expect = 5e-33 Identities = 284/409 (69%), Gaps = 10/409 (2%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 |||||||| ||||||||||| ||||| ||||| | |||||| | ||||| |||| || Sbjct 59110 CCGGTACCAATGCCCTCTGCGCCGTTCACCAGTAGCATCGGGAGGATAGGAACGTAGTAC 59051 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCA-CGTATTT---CAAAACGGAATTGTCAGC 151991 | ||||| || | ||| ||||| |||| | || ||| ||| | || | Sbjct 59050 ACGGGCTCAACTGGGAAACCATCATC-ATCAGCATAGCGGAGCAACACGTCGTCTTCCTC 58992 Query 151992 CGGATCGAATATCCGTCGAGTCATAGGACTCAAAC-GCGTGAAGATGTATCGGGAGCTGG 152050 ||| || ||| ||||| | || || |||| ||||| || |||| ||| | Sbjct 58991 GGGA---AAGATCAAGCGAGTG-TGCTTCTGAAGTTGCGTAAAGATATACCGGGGGCTAG 58936 Query 152051 CCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGA 152110 | |||||||| || ||| || ||| || ||||| || || || || | || || || Sbjct 58935 CTGCATCCTTACCTCCTTGCAACCGAGTACCAAATTGGCCGGATGGATACAGCAGCGGGA 58876 Query 152111 GGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTT 152170 ||||||||| ||| ||||||| || |||| |||||||||||| |||| |||| Sbjct 58875 GGTTGTTGGAGCCAACGAAATCTTGGGCCATATTCACAATCGTCGAATGCAACGAAGCTT 58816 Query 152171 CACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGT 152230 |||||||||| || || || || || | ||| || |||| |||||||||||| | | Sbjct 58815 CACCGTGGTGGTAAGCTGTGTGTTCACTGCAGTAGCCTGCCAGCTGCGCCACCTTTACTT 58756 Query 152231 CCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGA 152279 | | ||||| || ||| | ||| ||| ||| ||| |||||||| || Sbjct 58755 CGCTGGTCAGCTTGCGCTTCATACAAGCGAAAAGCACTTTGCGCTGCGA 58707 >seq69 Length=63067 Score = 145 bits (160), Expect = 8e-30 Identities = 567/873 (65%), Gaps = 15/873 (2%) Strand=Plus/Minus Query 74456 CTTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTT 74515 ||| || || || || || ||||| || |||||||| ||||| || | | |||||| | Sbjct 13399 CTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCAT 13340 Query 74516 CTCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCAT 74575 ||||||||||| || |||||||||||| | |||| | | | || | | || Sbjct 13339 GTCCATCCAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAGTACAA 13280 Query 74576 GAGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAG 74635 ||||| ||||| ||||| | ||||||||| ||| ||| | |||||| || || Sbjct 13279 CAGGCGGTCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAG 13220 Query 74636 TTTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACC-TCGCAAGCCCATTGGACAA 74694 | ||||| | || | |||||| ||| | | || | || | | | Sbjct 13219 CTCAACGGGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACT-GCGTCGCGAATGA 13161 Query 74695 TCTTGTGAATGTCTTTGGAAGGGCA-CTT-TTCCCTCAGGTGAGAGTAAA-GCGTCACGG 74751 || |||| | | | | ||||| ||| ||| || || | ||||| | | | |||| Sbjct 13160 TCGTGTGGACG-CGGTCCTCGGGCAGCTTGTTCACT-AGCTTGGAGTACATGAGGCACG- 13104 Query 74752 CAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAG 74811 |||| ||| ||| ||| ||||||| || || | || ||||| || ||||||| Sbjct 13103 CAAAGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAG 13044 Query 74812 GCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGC 74871 |||| || || |||||||||| ||||||||| | ||||| || || |||||| |||| Sbjct 13043 GCATGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGC 12984 Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACG--GTGCATCGGAAGTC-ATCC 74928 ||||||| | ||||| || | || || | |||| ||| | | | ||| || Sbjct 12983 CTTCGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGAAGATACTTGTGGGTCGCACC 12924 Query 74929 AAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAG 74987 | | | ||||| | || |||| || || | || |||| || || ||||| | | Sbjct 12923 ACTTGAGCGCCCAATTGGC-TTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGA 12865 Query 74988 AGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCC 75047 ||| ||||||| | || || | | | ||||||| | || || || ||| Sbjct 12864 AGGTGATCCTTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCC 12805 Query 75048 GAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTG 75106 || || || || | ||| |||| | | || || |||| || || | | || Sbjct 12804 GAGTGGATGTTTTCAAT-CGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTG 12746 Query 75107 TACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAA 75166 || || || ||| |||||| | | |||||| | || ||||| || ||| || || Sbjct 12745 CACTTCATTGCTAAAGTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAA 12686 Query 75167 AAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTT 75226 || || || || ||||||||||| ||||||| ||| ||||| || |||| ||||| Sbjct 12685 GAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTT 12626 Query 75227 CAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTA 75286 || || | |||| || | |||||| | |||||||| | |||||| ||||| Sbjct 12625 GAGATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTA 12566 Query 75287 CAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 || ||||| ||| | | | ||| ||||| Sbjct 12565 CATCTGCCACACGTCGTGCTCTTGGATCGGAAA 12533 >seq4 Length=112988 Score = 123 bits (136), Expect = 3e-23 Identities = 242/358 (68%), Gaps = 0/358 (0%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || ||||| || | |||||||| || | ||| || | || || ||| || Sbjct 80287 CCTGTTCCAATGCCGTCAGTGCCGTTGACGAGCACCATGGGGATGATCGGAATGTACCAC 80228 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 |||||||| | | ||||||||| || || || || | || |||||| ||| Sbjct 80227 TCCGGCTCGATCGATTGACCGTCTTCATCCAAATACTTGAGCACATCATTGTCTAAAGGA 80168 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 ||| | ||| || || | | |||| ||||| ||||| || || || |||||| Sbjct 80167 TCGTAGATCTTGCGGGTAAGTTGCTCCAAATTGGTGAAAATGTAACGAGAACTTGCCGCA 80108 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 |||||||| || || ||||| |||||||| || ||| || |||| | ||| Sbjct 80107 TCCTTGCCGCCCATCAAACGCGTACCAAACTGACCGATTGGCGACAGAAGGTGAATGTTA 80048 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 ||| || || |||| || |||| |||||| || ||||||| ||| ||| ||| Sbjct 80047 TTGCTTCCAACAAAATCTTGTGCCATATTCACGATACAACCCTGCAAACTTTGTTCGCCG 79988 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG 152233 ||||| ||||| | ||||| | | ||| || || || ||||||||||| | |||| Sbjct 79987 TGGTGGTACGCAGAGTGCTCGGATACGTAACCTGCTAATTGCGCCACCTTGAGCTCCG 79930 Score = 105 bits (116), Expect = 7e-18 Identities = 238/353 (67%), Gaps = 6/353 (2%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || ||||| || || || | || || | || | ||| || | || |||| ||| || Sbjct 80287 CCTGTTCCAATGCCGTCAGTGCCGTTGACGAGCACCATGGGGATGATCGGAATGTACCAC 80228 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || ||||| | | ||||||| || | ||||||||||| ||||||| ||| Sbjct 80227 TCCGGCTCGATCGATTGACCGTCTTCATCCAAATACTTGAGCACATCATTGTCTAAAGGA 80168 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCT--AGGCGAGTGAAAATGTAACGAGAGCTTGCAG 117329 ||| | || || ||| | | |||| | ||||||||||||||||| ||||| | Sbjct 80167 TCGTAGATCTTGCGGGT--AAGTTGCTCCAAATTGGTGAAAATGTAACGAGAACTTGCCG 80110 Query 117330 CATCCTTGCC-ACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGG 117388 |||||||||| ||| ||| ||||||||| || || || | ||| || |||| | | Sbjct 80109 CATCCTTGCCGCCCATCAA-ACGCGTACCAAACTGACCGATTGGCGACAGAAGGTGAATG 80051 Query 117389 TTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCA 117448 || ||| || ||||| | ||| |||| || || || ||| || | || || Sbjct 80050 TTATTGCTTCCAACAAAATCTTGTGCCATATTCACGATACAACCCTGCAAACTTTGTTCG 79991 Query 117449 CCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTT 117501 || ||||| ||||| | ||||| | ||||| || || | || |||||||| Sbjct 79990 CCGTGGTGGTACGCAGAGTGCTCGGATACGTAACCTGCTAATTGCGCCACCTT 79938 >seq5172 Length=1594 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 74762 ATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCC 74821 |||| ||||||||| | |||| |||||| ||||| | ||| ||||| || || Sbjct 1267 ATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAACTCAAGCCCGGCATCAGGCC 1326 Query 74822 ACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACA 74881 |||||| || | ||| || |||| |||||| |||| ||||| |||||||| | Sbjct 1327 ACGCTTTTTAAGCCAGAAAATGGAGCAGAAGCTACCAGAAAAGAAAATGCCTTCAATGGC 1386 Query 74882 CGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCA 74941 ||||||||||||||||| | || || | ||| | | ||||| | ||||||| Sbjct 1387 GGCAAAGGCGACAAGGCGCTCAGC-AAAGCTGCCTTTTTCG--ATCCAGCGCAGAGCCCA 1443 Query 74942 TTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGC 74991 |||||||| || |||| ||| | || || ||||| |||| |||| Sbjct 1444 CTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGCGCGGAACAGGC 1493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547152502423400