Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq478 183 2e-41 >seq478 Length=29740 Score = 183 bits (202), Expect = 2e-41 Identities = 404/593 (68%), Gaps = 16/593 (3%) Strand=Plus/Minus Query 29876 AGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCC 29935 ||||||||||||| | ||| || || || ||||| || | | || | |||||| || Sbjct 15630 AGCGGTTCCACGTGGTTCAGATACACATGCGCGTCACCAATGACATGAATAAACTCGCCG 15571 Query 29936 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29995 |||| | || | || || |||| | | ||| || || | |||||||||||| || Sbjct 15570 GGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCGTAGCTGGCGATATTG 15511 Query 29996 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 30055 || || || |||||||||||||| | || | |||||| | ||| ||||| | ||| ||| Sbjct 15510 AATGGGACGCCGAGCCCCATGTCAGCTGAGCGCTGGTACATCTGGCACGACAACTCACCG 15451 Query 30056 TC-GCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTC 30114 || ||| |||||||||||||| | ||||||||| || || |||||| | || Sbjct 15450 TCAGCT-ACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCCATGTCATTAAGATC 15392 Query 30115 TTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAG 30171 || |||||||| ||| | ||| || | || ||||| ||| || || | Sbjct 15391 AGCCGGATTCCAGGCCGACAGCACGATACGGCGATCAGAAGGGTTTGTCCGGAGTTTGTG 15332 Query 30172 GTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCG 30230 ||| | || ||||| ||||| || || | ||||| || |||||| | Sbjct 15331 TATCAC----CTCAGCGAGCTGGTCCACGCCTTGGCCTGTATAGTCGGCATGCATGTCGG 15276 Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290 |||||| ||| |||||||| | ||||||||| || || || ||||| |||||||| | | Sbjct 15275 TGTACTTTGCACCGAAATGACGCCACTGGAAACCATATACTGGTCCAAGGTCTCCTACCT 15216 Query 30291 CCCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30349 ||| ||| || ||||| || |||||| | || | || || ||| |||||||||| Sbjct 15215 CCC-GTGACTGTAAGCCTCTACTGTCCAGGTACTCACGCGATCCATTGCCGTCCCAGATA 15157 Query 30350 TTTACCCCCTTCTCAGAGAGC-TCTTTGGAGT-TTGTGGACCCTCTGACGAACCACAGCA 30407 || || || | ||| | | || | | ||| ||||| | | ||||||||||| Sbjct 15156 CGGACACCTTTTTGCTGTAGCGTGTGTGCACTCGTGT-CACCCT-TAATGAACCACAGCA 15099 Query 30408 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30460 ||||||| | || | ||| || || | ||| ||||| || | |||||| Sbjct 15098 GCTCCTCAGCCACACCTCGCCAGAACACGCGCTTCGTCGTCAGCAACGGAAAC 15046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406264431438036