Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq3915 217 1e-51 seq2003 120 3e-22 >seq3915 Length=2367 Score = 217 bits (240), Expect = 1e-51 Identities = 277/379 (73%), Gaps = 2/379 (1%) Strand=Plus/Plus Query 24282 CATGATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 24341 || |||||| ||||| | || || || || | ||| || |||||||| |||||||| Sbjct 664 CACGATGTCATCAAACATGACAGAAGGGTCATTGACGATATTGCGGATGATGTGGGTGTA 723 Query 24342 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGT 24401 |||||| ||||| || ||||| |||||||| ||||| | ||| |||||||| | Sbjct 724 TGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTCTCGATCCAGGTTTCCAGCTCGGG 783 Query 24402 GTCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAG 24461 ||||| | ||| | || | |||| || | ||||||||| | |||||||| || Sbjct 784 CAATGACACCAGCGGCAACAAGGCCACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAG 843 Query 24462 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATG-T 24520 |||| |||||||||||||||||||| || ||||| || || || ||||| | || | Sbjct 844 CGTCTGATACTTCAGGTTGCTGATGAAAATATGCTTTTCATGCTCGGGCAGGC-CTTGAT 902 Query 24521 AGTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCT 24580 |||| ||||| | | ||| | |||||||| |||||||||||||| | ||||| | Sbjct 903 AGTCAGCGCGGTCTTGCGACACATCGACTTCTTCTGGACGCCAGAAGAAGGAGAGTTGTT 962 Query 24581 TCTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTG 24640 |||||||||||||||||||| | | |||||| |||||||| || | || || | Sbjct 963 TCTCGATCAGCTTCTCGAACACCGGATATTTCTGTTGGTCATACCGCGCCACATTGACGG 1022 Query 24641 TCTCGCCGAGGAACATCGG 24659 || ||||| |||||| || Sbjct 1023 GCTGGCCGAAGAACATGGG 1041 Score = 113 bits (124), Expect = 4e-20 Identities = 191/277 (69%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 25322 CACGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCA 25381 |||| |||||||| | |||||| |||| ||||| ||||| ||||||||||| |||||| Sbjct 1887 CACGCGGTGGCTCGATACCGTTGGTGGCGTTGGCGATCTGGCTGGACGTCTCTGAAGGCA 1946 Query 25382 TCATCGTGGACAGCGTAGAGTTACGCAGTCCATGAATAGCGATGTCGATACGCAGCTTTT 25441 ||| || || ||| || |||||||||| |||| | || ||| ||||| ||| Sbjct 1947 TCAGCGCGGTCAGGGTGGAGTTACGCAAGCCATCTTTCTGAATCTCGGCGCGCAGGCTTT 2006 Query 25442 CCCAATCCATCTTCAGTTTCGCAGTGTGGAGGCCATCTACCTCTTTCTTGTAACGGTCGA 25501 |||| || | | || | | | || || | | || | ||||| ||||| | || | Sbjct 2007 CCCAGTCGAGCAGCAATGGCTCGTTGCAGACGGCGTCGAGGTCTTTTTTGTAGCTATCAA 2066 Query 25502 TCGGCAGAATGCCCTGAGAGTATGTGGTCTCGTGGAAGAGATCACATTTGCCCAGTTCTT 25561 |||||| |||||| | | ||| || || |||| || | ||||| ||| | ||| Sbjct 2067 TCGGCAAAATGCCTTTGGCGTAGGTAGTTTCGTTAAACGCACCACATGGGCCAAATTCGC 2126 Query 25562 TTGCCAGGTCAACCGACGCTTCCAGCAGGTAATACTG 25598 | | | || || |||| |||||||||||||| Sbjct 2127 GGGATAACTGCACTGAGGCTTTGAGCAGGTAATACTG 2163 >seq2003 Length=7520 Score = 120 bits (132), Expect = 3e-22 Identities = 151/207 (73%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 25828 CCGAGGTTGATGGCAGACAGAGTACACAGGGCCACTTCCCCCGGGTCGTTCGGA-TCATT 25886 || ||||| | ||| |||| |||||||| || | ||| || ||||| || || Sbjct 7473 CCCAGGTTAAAGGCCGACAAGGTACACAGCGCGATTTCGCC-------TTCGGTGTCGTT 7421 Query 25887 AATGTCCGTAATCGGATGTGTCGGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCAC 25946 ||||| | | || | || ||||| ||||||||||| |||||||||||||| ||| Sbjct 7420 GATGTCATTCAATGGCTTGGTTGGCAGCGCGATTTCCATACACAGGTTGGACTGACGCAC 7361 Query 25947 CGGGGCCTGTTCGGGGTCGAACGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTA 26006 ||| ||| | || || |||||||| | ||||||||||||||||||| ||| | ||| Sbjct 7360 CGGCGCCACGGCAGGATCAAACGGGCTGTGCGTGTTGCAGTGGTCAACGTTCTGGATGTA 7301 Query 26007 AATACGGCCTGTCTGAGAACGCTCCTG 26033 |||||||| || | ||||||||| Sbjct 7300 GATACGGCCGGTACCGGCACGCTCCTG 7274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478958816366560