Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_028672.1
Length=149732
Score E
Sequences producing significant alignments: (Bits) Value
seq3915 217 1e-51
seq2003 120 3e-22
>seq3915
Length=2367
Score = 217 bits (240), Expect = 1e-51
Identities = 277/379 (73%), Gaps = 2/379 (1%)
Strand=Plus/Plus
Query 24282 CATGATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 24341
|| |||||| ||||| | || || || || | ||| || |||||||| ||||||||
Sbjct 664 CACGATGTCATCAAACATGACAGAAGGGTCATTGACGATATTGCGGATGATGTGGGTGTA 723
Query 24342 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGT 24401
|||||| ||||| || ||||| |||||||| ||||| | ||| |||||||| |
Sbjct 724 TGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTCTCGATCCAGGTTTCCAGCTCGGG 783
Query 24402 GTCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAG 24461
||||| | ||| | || | |||| || | ||||||||| | |||||||| ||
Sbjct 784 CAATGACACCAGCGGCAACAAGGCCACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAG 843
Query 24462 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATG-T 24520
|||| |||||||||||||||||||| || ||||| || || || ||||| | || |
Sbjct 844 CGTCTGATACTTCAGGTTGCTGATGAAAATATGCTTTTCATGCTCGGGCAGGC-CTTGAT 902
Query 24521 AGTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCT 24580
|||| ||||| | | ||| | |||||||| |||||||||||||| | ||||| |
Sbjct 903 AGTCAGCGCGGTCTTGCGACACATCGACTTCTTCTGGACGCCAGAAGAAGGAGAGTTGTT 962
Query 24581 TCTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTG 24640
|||||||||||||||||||| | | |||||| |||||||| || | || || |
Sbjct 963 TCTCGATCAGCTTCTCGAACACCGGATATTTCTGTTGGTCATACCGCGCCACATTGACGG 1022
Query 24641 TCTCGCCGAGGAACATCGG 24659
|| ||||| |||||| ||
Sbjct 1023 GCTGGCCGAAGAACATGGG 1041
Score = 113 bits (124), Expect = 4e-20
Identities = 191/277 (69%), Gaps = 0/277 (0%)
Strand=Plus/Plus
Query 25322 CACGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCA 25381
|||| |||||||| | |||||| |||| ||||| ||||| ||||||||||| ||||||
Sbjct 1887 CACGCGGTGGCTCGATACCGTTGGTGGCGTTGGCGATCTGGCTGGACGTCTCTGAAGGCA 1946
Query 25382 TCATCGTGGACAGCGTAGAGTTACGCAGTCCATGAATAGCGATGTCGATACGCAGCTTTT 25441
||| || || ||| || |||||||||| |||| | || ||| ||||| |||
Sbjct 1947 TCAGCGCGGTCAGGGTGGAGTTACGCAAGCCATCTTTCTGAATCTCGGCGCGCAGGCTTT 2006
Query 25442 CCCAATCCATCTTCAGTTTCGCAGTGTGGAGGCCATCTACCTCTTTCTTGTAACGGTCGA 25501
|||| || | | || | | | || || | | || | ||||| ||||| | || |
Sbjct 2007 CCCAGTCGAGCAGCAATGGCTCGTTGCAGACGGCGTCGAGGTCTTTTTTGTAGCTATCAA 2066
Query 25502 TCGGCAGAATGCCCTGAGAGTATGTGGTCTCGTGGAAGAGATCACATTTGCCCAGTTCTT 25561
|||||| |||||| | | ||| || || |||| || | ||||| ||| | |||
Sbjct 2067 TCGGCAAAATGCCTTTGGCGTAGGTAGTTTCGTTAAACGCACCACATGGGCCAAATTCGC 2126
Query 25562 TTGCCAGGTCAACCGACGCTTCCAGCAGGTAATACTG 25598
| | | || || |||| ||||||||||||||
Sbjct 2127 GGGATAACTGCACTGAGGCTTTGAGCAGGTAATACTG 2163
>seq2003
Length=7520
Score = 120 bits (132), Expect = 3e-22
Identities = 151/207 (73%), Gaps = 8/207 (4%)
Strand=Plus/Minus
Query 25828 CCGAGGTTGATGGCAGACAGAGTACACAGGGCCACTTCCCCCGGGTCGTTCGGA-TCATT 25886
|| ||||| | ||| |||| |||||||| || | ||| || ||||| || ||
Sbjct 7473 CCCAGGTTAAAGGCCGACAAGGTACACAGCGCGATTTCGCC-------TTCGGTGTCGTT 7421
Query 25887 AATGTCCGTAATCGGATGTGTCGGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCAC 25946
||||| | | || | || ||||| ||||||||||| |||||||||||||| |||
Sbjct 7420 GATGTCATTCAATGGCTTGGTTGGCAGCGCGATTTCCATACACAGGTTGGACTGACGCAC 7361
Query 25947 CGGGGCCTGTTCGGGGTCGAACGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTA 26006
||| ||| | || || |||||||| | ||||||||||||||||||| ||| | |||
Sbjct 7360 CGGCGCCACGGCAGGATCAAACGGGCTGTGCGTGTTGCAGTGGTCAACGTTCTGGATGTA 7301
Query 26007 AATACGGCCTGTCTGAGAACGCTCCTG 26033
|||||||| || | |||||||||
Sbjct 7300 GATACGGCCGGTACCGGCACGCTCCTG 7274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478958816366560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |