Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq3915 95.1 1e-14 >seq3915 Length=2367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 19468 GACTGGGAAGCGCTTCGTGCCGACATCATGAAATATGGTCTTCGTAACTCTACGTTGTCA 19527 ||||||||| || || ||||| || |||| |||| | |||||||| || || | Sbjct 2013 GACTGGGAAAGCCTGCGCGCCGAGATTCAGAAAGATGGCTTGCGTAACTCCACCCTGACC 1954 Query 19528 GCGCTGATGCCTTGTGAATCAAGTTCA--CAGATCACCAACTCCACGAACGGTATCGAGC 19585 ||||||||||||| || | || || |||||| ||||| |||| ||||||||||||| Sbjct 1953 GCGCTGATGCCTTCAGAGAC--GTCCAGCCAGATCGCCAACGCCACCAACGGTATCGAGC 1896 Query 19586 CGCCTCGTCAGTTGCTGAGTGTAAAACAGTCTAAAGACGGTGTACTGAATCAGCTTGTTC 19645 | || ||| || || || || ||||| |||||||| | ||| ||| | || | Sbjct 1895 CACCGCGTGGCCTGGTGTCGGTCAAGCAGTCCAAAGACGGCATCCTGCGCCAGGTAGTGC 1836 Query 19646 CTGAAGTTGA 19655 |||| |||| Sbjct 1835 CTGAGATTGA 1826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582668380771400