Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq2003 149 6e-31 >seq2003 Length=7520 Score = 149 bits (164), Expect = 6e-31 Identities = 313/461 (68%), Gaps = 8/461 (2%) Strand=Plus/Minus Query 140128 AACAACGTGATGTAATCGTTTTTAATCAGACGTTCAATCATGAGGTCGTTAATTTGAACA 140187 |||| ||||||| | | || ||||| || | ||| ||| ||| || || || Sbjct 7131 AACAGAGTGATGTTCTGGCCCTTGATCAGGCGCTGGTACATCAGGCGGTTGATCTGCACG 7072 Query 140188 CCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGTACGAGC 140247 |||||||| || || || | ||||||||| || || || ||||| ||||| || ||| Sbjct 7071 CCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTTTTCAGCACCAGC 7012 Query 140248 AGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCGCCACCGCGAATG 140307 || ||| |||||||| ||||| | ||| ||| |||| || || || ||||| || | Sbjct 7011 AGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCCCCACCCCGCACA 6952 Query 140308 CCGCCTTGAGAACAAGATTTAACAGAAG-CTAAGTGAGTTTTCCAGAATGGAATAACGCC 140366 ||||| || || || ||||| || | || || ||||| |||| || | || Sbjct 6951 CCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAGTTTGT-AGAACGGCAGGCAACC 6893 Query 140367 TGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACG---ATACATTCCAGC 140423 ||||| | |||| || | | |||| || |||| || || | || || Sbjct 6892 GGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCC--CAGCGCGCGGATGCGGCCC-GC 6836 Query 140424 GTTAACACCAATACCGGCACGTTTGCTGATATATTTGATGATTGCTTTGTTTACTGCATT 140483 ||| || || || ||||| |||| || ||| || | ||| || || | |||||| Sbjct 6835 GTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGATCGCGCTGGTGGTTGCATT 6776 Query 140484 AATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAACTGGCGAGTCGG 140543 || ||||| || || || | | || || | ||||| || ||||||||||| || || Sbjct 6775 GATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAACTGGCGCGTAGG 6716 Query 140544 AGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCT 140584 |||||| ||||||||||| || || |||||||| || |||| Sbjct 6715 AGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGATCT 6675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518535023509480