Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq5998 168 2e-37 >seq5998 Length=1361 Score = 168 bits (186), Expect = 2e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40175 AAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40234 ||||||||||||| |||||||||||||||||| || ||||||||||| ||||| || | Sbjct 711 AAGTCGATGTCAAAGTCGGGCATGGACACGCGTTCCGGGTTCAGGAAGCGCTCAAACAGC 770 Query 40235 AGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCG 40294 | || || |||||||| || ||||| || || | || |||||| |||| || || Sbjct 771 AAGTTGTACTTGAGTGGATCAAGATCGGTAATGCCCAAGCTGTAGGCAACCAATGAGCCA 830 Query 40295 GCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAG 40354 || | || || ||||| || || ||| |||||| || | |||||||||| ||| ||| Sbjct 831 GCACCAGATCCGCGCCCCGGCCCTACCGGCACGCCATTGTTCTTGGCCCAGTTGATAAAG 890 Query 40355 TCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCG 40405 || || |||| ||| |||||| || ||||||||||| || || ||| || Sbjct 891 TCTGCCACGATCAGAAAGTAGCCGGGAAAGCCCATCTGAATAATGATGCCG 941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160388717500242